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    • movement

      Public
      Python tools for analysing body movements across space and time
      Python
      BSD 3-Clause "New" or "Revised" License
      81058711Updated Nov 22, 2024Nov 22, 2024
    • Lightweight data specification for systems neuroscience, inspired by BIDS.
      Creative Commons Attribution 4.0 International
      11791Updated Nov 22, 2024Nov 22, 2024
    • Home website of the Neuroinformatics Unit
      BSD 3-Clause "New" or "Revised" License
      0781Updated Nov 22, 2024Nov 22, 2024
    • Numcodecs implementation of photon conversion using poisson statistics
      Python
      MIT License
      7000Updated Nov 22, 2024Nov 22, 2024
    • Derotate images acquired via 2-photon or 3-photon calcium imaging
      Python
      BSD 3-Clause "New" or "Revised" License
      07144Updated Nov 21, 2024Nov 21, 2024
    • HowTo

      Public
      NIU website on common software problems and their troubleshooting
      Creative Commons Attribution 4.0 International
      19121Updated Nov 21, 2024Nov 21, 2024
    • ethology

      Public
      Data processing tools for animal behavioural analysis
      Python
      BSD 3-Clause "New" or "Revised" License
      0810Updated Nov 20, 2024Nov 20, 2024
    • suite2p

      Public
      cell detection in calcium imaging recordings
      Jupyter Notebook
      GNU General Public License v3.0
      244000Updated Nov 19, 2024Nov 19, 2024
    • spikewrap

      Public
      A tool to streamline extracellular electrophysiology analysis using SpikeInterface
      Python
      BSD 3-Clause "New" or "Revised" License
      013253Updated Nov 18, 2024Nov 18, 2024
    • Automate analysis and tracking of multiple calcium imaging datasets to compare parameters choices
      Python
      BSD 3-Clause "New" or "Revised" License
      0001Updated Nov 18, 2024Nov 18, 2024
    • Covering how to build electrophysiology pipelines with SpikeInterface
      Python
      MIT License
      0500Updated Nov 5, 2024Nov 5, 2024
    • Utility to create a basic Python project structure with tests, CI etc.
      Python
      BSD 3-Clause "New" or "Revised" License
      324141Updated Nov 5, 2024Nov 5, 2024
    • Software skills training at the Sainsbury Wellcome Centre & Gatsby Computational Neuroscience Unit
      Creative Commons Attribution 4.0 International
      0700Updated Nov 5, 2024Nov 5, 2024
    • swc-slack

      Public
      Tools to interface with slack
      Python
      BSD 3-Clause "New" or "Revised" License
      1700Updated Nov 4, 2024Nov 4, 2024
    • fancylog

      Public
      Fancier logging with python.
      Python
      BSD 3-Clause "New" or "Revised" License
      41250Updated Nov 4, 2024Nov 4, 2024
    • slurmio

      Public
      Python tools to read SLURM job parameters.
      Python
      MIT License
      1700Updated Nov 4, 2024Nov 4, 2024
    • Tool for the creation, validation and transfer of neuroscience project folders.
      Python
      BSD 3-Clause "New" or "Revised" License
      315433Updated Nov 4, 2024Nov 4, 2024
    • Evaluate the model for the translocator project
      Python
      BSD 3-Clause "New" or "Revised" License
      0100Updated Nov 4, 2024Nov 4, 2024
    • actions

      Public
      Re-usable GitHub Action scripts
      MIT License
      31050Updated Nov 4, 2024Nov 4, 2024
    • rsp-vision

      Public archive
      Analysis and visualization of calcium imaging data from retrosplenial cortex
      Python
      BSD 3-Clause "New" or "Revised" License
      08230Updated Oct 28, 2024Oct 28, 2024
    • .github

      Public
      MIT License
      0600Updated Oct 8, 2024Oct 8, 2024
    • Materials and slides for the video-based analysis of animal behaviour course.
      Jupyter Notebook
      BSD 3-Clause "New" or "Revised" License
      1430Updated Oct 3, 2024Oct 3, 2024
    • Python
      BSD 3-Clause "New" or "Revised" License
      0520Updated Oct 2, 2024Oct 2, 2024
    • Slides for NIU collaborative coding and software development good practices
      SCSS
      BSD 3-Clause "New" or "Revised" License
      0700Updated Oct 2, 2024Oct 2, 2024
    • Slides introducing the software skills courses on the SWC/GCNU PhD course
      SCSS
      BSD 3-Clause "New" or "Revised" License
      2120Updated Sep 30, 2024Sep 30, 2024
    • Toy examples highlighting good data management practices
      Python
      MIT License
      0600Updated Sep 26, 2024Sep 26, 2024
    • dashboard

      Public
      Overview of all Neuroinformatics Unit repos
      TypeScript
      MIT License
      21120Updated Sep 24, 2024Sep 24, 2024
    • org-metrics-dashboard

      Public archive
      Overview of all NIU repos
      TypeScript
      MIT License
      21100Updated Sep 5, 2024Sep 5, 2024
    • SCSS
      BSD 3-Clause "New" or "Revised" License
      0100Updated Sep 4, 2024Sep 4, 2024
    • A template to generate repositories used to teach SE best practices
      Python
      BSD 3-Clause "New" or "Revised" License
      0600Updated Sep 4, 2024Sep 4, 2024