CMO Cell-Free DNA (cfDNA) Informatics Team

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30 packages

gatk
Published Dec 16, 2020 by CMO Cell-Free DNA (cfDNA) Informatics Team

156k
fgbio
Published Dec 16, 2020 by CMO Cell-Free DNA (cfDNA) Informatics Team

45.4k
biometrics
Published Mar 26, 2021 by CMO Cell-Free DNA (cfDNA) Informatics Team in msk-access/biometrics

35.9k
gbcms
Published May 26, 2021 by CMO Cell-Free DNA (cfDNA) Informatics Team in msk-access/GetBaseCountsMultiSample

15.9k
bedtools
Published Dec 16, 2020 by CMO Cell-Free DNA (cfDNA) Informatics Team

14.4k
sequence_qc
Published Apr 19, 2021 by CMO Cell-Free DNA (cfDNA) Informatics Team

10k
postprocessing_variant_calls
Published May 24, 2022 by CMO Cell-Free DNA (cfDNA) Informatics Team in msk-access/postprocessing_variant_calls

8.5k
abra2
Published Jan 26, 2021 by CMO Cell-Free DNA (cfDNA) Informatics Team

6.91k
bwa
Published Jan 26, 2021 by CMO Cell-Free DNA (cfDNA) Informatics Team

6.75k
fastp
Published Dec 16, 2020 by CMO Cell-Free DNA (cfDNA) Informatics Team

5.04k
mosdepth
Published Mar 4, 2022 by CMO Cell-Free DNA (cfDNA) Informatics Team

4.91k
fgbio_postprocessing
Published Dec 16, 2020 by CMO Cell-Free DNA (cfDNA) Informatics Team

4.29k
cci_utils
Published May 27, 2022 by CMO Cell-Free DNA (cfDNA) Informatics Team

3.9k
multiqc
Published May 19, 2021 by CMO Cell-Free DNA (cfDNA) Informatics Team in msk-access/MultiQC

2.78k
genotype_variants
Published Jan 16, 2024 by CMO Cell-Free DNA (cfDNA) Informatics Team

2.43k
access_utils
Published Jun 4, 2021 by CMO Cell-Free DNA (cfDNA) Informatics Team in msk-access/access_utils

1.34k
vcf2maf
Published Mar 8, 2022 by CMO Cell-Free DNA (cfDNA) Informatics Team

671
genomenexus
Published Mar 18, 2024 by CMO Cell-Free DNA (cfDNA) Informatics Team

635
athena
Published Jun 1, 2022 by CMO Cell-Free DNA (cfDNA) Informatics Team in msk-access/athena

607
genomenexus_annotation-pipeline
Published Mar 19, 2024 by CMO Cell-Free DNA (cfDNA) Informatics Team

526
bcftools
Published Apr 25, 2022 by CMO Cell-Free DNA (cfDNA) Informatics Team

409
delly
Published Apr 15, 2022 by CMO Cell-Free DNA (cfDNA) Informatics Team

339
mutect1
Published Dec 20, 2023 by CMO Cell-Free DNA (cfDNA) Informatics Team in msk-access/mutect1

337
vardictjava
Published Nov 4, 2021 by CMO Cell-Free DNA (cfDNA) Informatics Team

333
waltz
Published Dec 12, 2020 by CMO Cell-Free DNA (cfDNA) Informatics Team

320
samtools
Published Apr 25, 2022 by CMO Cell-Free DNA (cfDNA) Informatics Team

316
msisensor-ct
Published Sep 26, 2023 by CMO Cell-Free DNA (cfDNA) Informatics Team in msk-access/msisensor-ct

250
oncokbannotator
Published Nov 17, 2022 by CMO Cell-Free DNA (cfDNA) Informatics Team

201
snpsift
Published Oct 3, 2022 by CMO Cell-Free DNA (cfDNA) Informatics Team

194
mutect
Published Dec 12, 2020 by CMO Cell-Free DNA (cfDNA) Informatics Team

181