Repositories list

• infertility_hormones

  Public
  Scripts for infertility and hormone GWAS meta-analyses and follow-up

  R

  •0•0•0•0•Updated Aug 22, 2024Aug 22, 2024

• longitudinal_primarycare

  Public
  Scripts for assessing longitudinal quantitative traits in UKBIOBANK-linked primary care data

  longitudinal-dataobesityprimary-care+ 1hormones

  R

  •0•1•0•0•Updated Jul 25, 2024Jul 25, 2024

• hail-on-dnanexus

  Public
  An unofficial alternative to DXJupyterlab Spark Cluster App

  Shell

  •1•6•0•0•Updated Jun 27, 2023Jun 27, 2023

• p50_Infertility

  Public
  R

  •

  Apache License 2.0

  •0•0•0•0•Updated May 11, 2023May 11, 2023

• cell_line

  Public
  R

  •

  GNU General Public License v3.0

  •1•0•0•0•Updated Jan 2, 2023Jan 2, 2023

• ukbb-meta

  Public
  Jupyter Notebook

  •0•0•0•0•Updated Nov 25, 2022Nov 25, 2022

• Reverse-Variant-Calling

  Public
  Shell

  •

  Apache License 2.0

  •0•0•0•0•Updated Nov 16, 2022Nov 16, 2022

• hail-minimal

  Public
  A DNAnexus applet for running hail.is python scripts

  WDL

  •0•0•0•0•Updated Nov 15, 2022Nov 15, 2022

• BRaVa_curation

  Public
  R

  •

  GNU General Public License v3.0

  •5•0•0•0•Updated Oct 6, 2022Oct 6, 2022

• SAIGE_gene_munging

  Public
  R

  •2•0•0•0•Updated May 18, 2022May 18, 2022

• obesity_femrepr_MR

  Public
  Code for analyses in "Obesity and risk of female reproductive disorders: A Mendelian Randomisation Study"

  obesitymendelian-randomizationfemale-reproductive-disease

  R

  •2•15•0•0•Updated Feb 8, 2022Feb 8, 2022

• share

  Public
  Files to be shared externally.

  MIT License

  •0•0•0•0•Updated Feb 10, 2021Feb 10, 2021

• causal.relationships.between.obesity.and.leading.causes.of.death.in.men.and.women

  Public
  Code and genetic risk scores related to "Causal relationships between obesity and leading causes of death in men and women"

  R

  •0•0•0•0•Updated Oct 14, 2019Oct 14, 2019

• CredibleSet

  Public
  R script for credible sets

  R

  •2•0•0•0•Updated Dec 10, 2018Dec 10, 2018

• fatdistnGWAS

  Public
  Code and data related to the meta-analysis of fat distribution in UK Biobank and GIANT

  Shell

  •23•18•0•0•Updated Dec 5, 2018Dec 5, 2018

• CellProfilerPipelines

  Public
  0•0•0•0•Updated Nov 30, 2018Nov 30, 2018

• TowardsDeepPhenotyping

  Public
  Jupyter Notebook

  •12•0•0•0•Updated Apr 10, 2018Apr 10, 2018

• Afib-Stroke-Overlap

  Public
  Code and calls to software that accompanies manuscript on the overlap of atrial fibrillation genetics and cardioembolic stroke

  R

  •4•0•0•0•Updated Dec 23, 2017Dec 23, 2017

• UveitisJIA_MHC-fineMapping

  Public
  Scripts and data used in analyses for "An amino acid motif in HLA-DRβ1 distinguishes patients with uveitis in juvenile idiopathic arthritis." Preprint: https://www.biorxiv.org/content/early/2017/08/14/140954

  Shell

  •6•0•0•0•Updated Nov 15, 2017Nov 15, 2017

• gwas-scripts

  Public
  A repository containing various scripts useful for performing quality control on data from genome-wide association studies and visualizing results

  R

  •8•3•0•0•Updated Oct 14, 2017Oct 14, 2017

• alexd

  Public
  Shell

  •0•0•0•0•Updated Jul 11, 2017Jul 11, 2017

• atac_dnase_pipelines

  Public
  ATAC-seq and DNase-seq processing pipeline

  Python

  •

  BSD 3-Clause "New" or "Revised" License

  •81•0•0•0•Updated Apr 28, 2017Apr 28, 2017

• NeuralNetwork-Examples

  Public
  The same small networks implemented in different frameworks

  Jupyter Notebook

  •27•0•0•0•Updated Apr 2, 2017Apr 2, 2017

• poe_shapeit

  Public
  Shell

  •0•0•0•0•Updated Nov 18, 2016Nov 18, 2016

• multivariate

  Public
  R

  •0•0•0•0•Updated Aug 11, 2016Aug 11, 2016