Li Lab (Statistical Genetics and Bioinformatics)

All

8 repositories

staarpipeline-rap-batch
Public
R
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MIT License
•0•1•0•0•Updated Nov 21, 2024Nov 21, 2024
staarpipeline-rap
Public
An app for performing association analysis of whole-genome/whole-exome sequencing (WGS/WES) studies using STAARpipeline in UK Biobank RAP
statistical-genetics whole-exome-sequencing whole-genome-sequencing functional-annotation staar-pipeline
R
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MIT License
•2•4•0•0•Updated Nov 19, 2024Nov 19, 2024
MetaSTAARlite
Public
A lightweight R package for performing association meta-analysis of whole-genome/whole-exome sequencing (WGS/WES) studies using MetaSTAAR pipeline
meta-analysis statistical-genetics whole-exome-sequencing whole-genome-sequencing functional-annotation rare-variant-meta-analysis metastaar-lite-pipeline
R
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GNU General Public License v3.0
•1•1•0•0•Updated Nov 7, 2024Nov 7, 2024
MetaSTAARlite-Tutorial
Public
The tutorial for performing association meta-analysis of whole-genome/whole-exome sequencing (WGS/WES) studies using FAVORannotator, MetaSTAARlite and MetaSTAARliteSummary
meta-analysis statistical-genetics whole-exome-sequencing whole-genome-sequencing functional-annotation rare-variant-meta-analysis metastaar-lite-pipeline
R
•1•1•0•0•Updated Oct 19, 2024Oct 19, 2024
favorannotator-rap
Public
An app for automatically functionally annotating the variants of whole-genome/whole-exome sequencing (WGS/WES) studies and integrating the functional annotations with the genotype data using FAVORannotator in UK Biobank RAP
whole-exome-sequencing whole-genome-sequencing functional-annotation favor-annotator
R
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MIT License
•0•3•0•0•Updated Feb 16, 2024Feb 16, 2024
staarpipelinesummary_indvar-rap
Public
An app for summarizing association analysis results of whole-genome/whole-exome sequencing (WGS/WES) studies in UK Biobank RAP
statistical-genetics whole-exome-sequencing whole-genome-sequencing functional-annotation staar-pipeline
R
•
MIT License
•1•2•0•0•Updated Oct 3, 2023Oct 3, 2023
staarpipelinesummary_varset-rap
Public
An app for summarizing association analysis results of whole-genome/whole-exome sequencing (WGS/WES) studies in UK Biobank RAP
statistical-genetics whole-exome-sequencing whole-genome-sequencing functional-annotation staar-pipeline
R
•
MIT License
•1•2•0•0•Updated Oct 3, 2023Oct 3, 2023
.github
Public
0•0•0•0•Updated Sep 14, 2023Sep 14, 2023