Repositories list

• gatk

  Public
  Official code repository for GATK versions 4 and up

  Java

  •

  Other

  •594•0•0•0•Updated Nov 25, 2024Nov 25, 2024

• awesome-single-cell

  Public
  Community-curated list of software packages and data resources for single-cell, including RNA-seq, ATAC-seq, etc.

  MIT License

  •990•0•0•0•Updated Nov 25, 2024Nov 25, 2024

• dify

  Public
  Dify is an open-source LLM app development platform. Dify's intuitive interface combines AI workflow, RAG pipeline, agent capabilities, model management, observability features and more, letting you quickly go from prototype to production.

  TypeScript

  •

  Other

  •7.7k•0•0•0•Updated Nov 25, 2024Nov 25, 2024

• galaxy

  Public
  Data intensive science for everyone.

  Python

  •

  Other

  •1k•0•0•0•Updated Nov 22, 2024Nov 22, 2024

• esm

  Public
  Evolutionary Scale Modeling (esm): Pretrained language models for proteins

  Python

  •

  MIT License

  •643•0•0•0•Updated Aug 22, 2022Aug 22, 2022

• PaddleHelix

  Public
  Bio-Computing Platform Featuring Large-Scale Representation Learning and Multi-Task Deep Learning “螺旋桨”生物计算工具集

  Python

  •

  Apache License 2.0

  •225•0•0•0•Updated Jul 20, 2022Jul 20, 2022

• deepchem

  Public
  Democratizing Deep-Learning for Drug Discovery, Quantum Chemistry, Materials Science and Biology

  Python

  •

  MIT License

  •1.7k•0•0•0•Updated Jul 19, 2022Jul 19, 2022

• PumpkinJob-Client-PHP

  Public
  PumpkinJob-Client-PHP

  PHP

  •

  Apache License 2.0

  •0•0•0•0•Updated May 21, 2022May 21, 2022

• soft-sec-website

  Public
  PHP

  •1•0•0•0•Updated May 18, 2022May 18, 2022

• pumpkinjob-php-getting-started

  Public template
  pumpkinjob-php-getting-started

  Makefile

  •

  Apache License 2.0

  •0•0•0•0•Updated May 17, 2022May 17, 2022

• HIS

  Public
  Java

  •

  Apache License 2.0

  •0•0•0•0•Updated May 5, 2022May 5, 2022

• HIS-web

  Public
  HIS-web

  HTML

  •0•0•0•0•Updated May 5, 2022May 5, 2022

• HIS1

  Public
  HIS英文全称 hospital information system（医疗信息就诊系统），系统主要功能按照数据流量、流向及处理过程分为临床诊疗、药品管理、财务管理、患者管理。诊疗活动由各工作站配合完成，并将临床信息进行整理、处理、汇总、统计、分析等。本系统包括以下工作站：门诊医生工作站、药房医生工作站、医技医生工作站、收费员工作站、对帐员工作站、管理员工作站。需求为东软提供的云医院。

  Java

  •

  Apache License 2.0

  •527•0•0•0•Updated Apr 25, 2022Apr 25, 2022

• MyUploader

  Public
  单文件上传，多文件上传，大文件上传，断点续传，文件秒传，图片上传

  JavaScript

  •

  Apache License 2.0

  •200•0•0•0•Updated Apr 15, 2022Apr 15, 2022

• MyUploader-Backend

  Public
  单文件上传，多文件上传，大文件上传，断点续传，文件秒传，图片上传

  Java

  •

  Apache License 2.0

  •214•0•0•0•Updated Apr 15, 2022Apr 15, 2022

• oddt

  Public
  Open Drug Discovery Toolkit

  Python

  •

  BSD 3-Clause "New" or "Revised" License

  •119•0•0•0•Updated Feb 3, 2022Feb 3, 2022

• MoleculeX

  Public
  Python

  •

  GNU General Public License v3.0

  •26•0•0•0•Updated Jan 11, 2022Jan 11, 2022

• wdl-ide

  Public
  Rich IDE support for Workflow Description Language

  Python

  •

  BSD 3-Clause "New" or "Revised" License

  •9•0•0•0•Updated Dec 21, 2021Dec 21, 2021

• CocoJob

  Public
  CocoJob

  Java

  •

  Apache License 2.0

  •1•0•0•0•Updated Dec 17, 2021Dec 17, 2021

• biojava

  Public
  📖🔬☕ BioJava is an open-source project dedicated to providing a Java library for processing biological data.

  Java

  •

  GNU Lesser General Public License v2.1

  •388•0•0•0•Updated Dec 11, 2021Dec 11, 2021

• CocoJob-Console

  Public
  Vue

  •

  Apache License 2.0

  •0•0•0•0•Updated Dec 2, 2021Dec 2, 2021

• PowerJob-Console

  Public
  分布式任务调度与计算框架（PowerJob）前端界面

  Vue

  •

  Apache License 2.0

  •131•0•0•0•Updated Dec 1, 2021Dec 1, 2021

• PowerJob

  Public
  Enterprise job scheduling middleware with distributed computing ability.

  Java

  •

  Apache License 2.0

  •1.3k•0•0•0•Updated Dec 1, 2021Dec 1, 2021

• tke

  Public
  Native Kubernetes container management platform supporting multi-tenant and multi-cluster

  Go

  •

  Other

  •335•0•0•0•Updated Nov 26, 2021Nov 26, 2021

• TBtools

  Public
  GUI/CommandLine Tool Box for biologistists to utilize NGS data.

  Shell

  •188•0•0•0•Updated Nov 3, 2021Nov 3, 2021

• open-pryv.io

  Public
  open source version of Pryv.io

  JavaScript

  •

  Other

  •24•0•0•0•Updated Oct 28, 2021Oct 28, 2021

• portal

  Public
  合生基因门户网站

  Vue

  •7•0•0•0•Updated Oct 17, 2021Oct 17, 2021

• deepvariant

  Public
  DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data.

  Python

  •

  BSD 3-Clause "New" or "Revised" License

  •728•0•0•0•Updated Oct 11, 2021Oct 11, 2021

• gene-tree

  Public
  一个基于 phylotree.js 进行二次开发的基因可视化进化树，主要用于基因序列可视化分析等，目前该版本只是简单的示例，若用于生产环境中需进一步开发。。。

  JavaScript

  •3•1•0•0•Updated Sep 2, 2021Sep 2, 2021

• awesome-healthcare

  Public
  Curated list of awesome open source healthcare software, libraries, tools and resources.

  Creative Commons Zero v1.0 Universal

  •371•0•0•0•Updated Sep 1, 2021Sep 1, 2021