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Merge main the feature branch. (#2376)
* Update timm requirement from <=1.0.7,>=1.0.7 to >=1.0.7,<=1.0.9 (#2274) * Update timm requirement from <=1.0.7,>=1.0.7 to >=1.0.7,<=1.0.9 Updates the requirements on [timm](https://github.com/huggingface/pytorch-image-models) to permit the latest version. - [Release notes](https://github.com/huggingface/pytorch-image-models/releases) - [Commits](huggingface/pytorch-image-models@v1.0.7...v1.0.9) --- updated-dependencies: - dependency-name: timm dependency-type: direct:production ... Signed-off-by: dependabot[bot] <support@github.com> * Update pyproject.toml --------- Signed-off-by: dependabot[bot] <support@github.com> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> Co-authored-by: Samet Akcay <samet.akcay@intel.com> * 🐞Update `setuptools` requirement for PEP 660 support (#2320) Update setup tools Signed-off-by: Samet Akcay <samet.akcay@intel.com> * Fix transforms for draem, dsr and rkde (#2324) Signed-off-by: Blaz Rolih <blaz.rolih@gmail.com> * Add check before loading metrics data from checkpoint (#2323) Add check before loading from checkpoint Signed-off-by: Blaz Rolih <blaz.rolih@gmail.com> Co-authored-by: Samet Akcay <samet.akcay@intel.com> * Add PIMO (#2329) * PIMO (#1726) * update Signed-off-by: jpcbertoldo <24547377+jpcbertoldo@users.noreply.github.com> * test binclf curves numpy and numba and fixes Signed-off-by: jpcbertoldo <24547377+jpcbertoldo@users.noreply.github.com> * correct som docstrings Signed-off-by: jpcbertoldo <24547377+jpcbertoldo@users.noreply.github.com> * torch interface and tests Signed-off-by: jpcbertoldo <24547377+jpcbertoldo@users.noreply.github.com> * torch interface and tests Signed-off-by: jpcbertoldo <24547377+jpcbertoldo@users.noreply.github.com> * constants regrouped in dataclass as class vars Signed-off-by: jpcbertoldo <24547377+jpcbertoldo@users.noreply.github.com> * result class was unneccesary for per_image_binclf_curve Signed-off-by: jpcbertoldo <24547377+jpcbertoldo@users.noreply.github.com> * factorize function _get_threshs_minmax_linspace Signed-off-by: jpcbertoldo <24547377+jpcbertoldo@users.noreply.github.com> * small docs fixes Signed-off-by: jpcbertoldo <24547377+jpcbertoldo@users.noreply.github.com> * add pimo numpy version and test Signed-off-by: jpcbertoldo <24547377+jpcbertoldo@users.noreply.github.com> * move validation Signed-off-by: jpcbertoldo <24547377+jpcbertoldo@users.noreply.github.com> * add `shared_fpr_metric` option Signed-off-by: jpcbertoldo <24547377+jpcbertoldo@users.noreply.github.com> * add pimo torch functional version and test Signed-off-by: jpcbertoldo <24547377+jpcbertoldo@users.noreply.github.com> * add torchmetrics interface and test Signed-off-by: jpcbertoldo <24547377+jpcbertoldo@users.noreply.github.com> * renames and put things in init Signed-off-by: jpcbertoldo <24547377+jpcbertoldo@users.noreply.github.com> * validate inputs in result objects Signed-off-by: jpcbertoldo <24547377+jpcbertoldo@users.noreply.github.com> * result objects to from dict and tests Signed-off-by: jpcbertoldo <24547377+jpcbertoldo@users.noreply.github.com> * add save and load methods to result objects and test Signed-off-by: jpcbertoldo <24547377+jpcbertoldo@users.noreply.github.com> * refactor validations and minor changes Signed-off-by: jpcbertoldo <24547377+jpcbertoldo@users.noreply.github.com> * test result objects' properties Signed-off-by: jpcbertoldo <24547377+jpcbertoldo@users.noreply.github.com> * minor refactors Signed-off-by: jpcbertoldo <24547377+jpcbertoldo@users.noreply.github.com> * add missing docstrings Signed-off-by: jpcbertoldo <24547377+jpcbertoldo@users.noreply.github.com> * minore vocabulary fix for consistency Signed-off-by: jpcbertoldo <24547377+jpcbertoldo@users.noreply.github.com> * add per image scores statistics and test it Signed-off-by: jpcbertoldo <24547377+jpcbertoldo@users.noreply.github.com> * refactor constants notation Signed-off-by: jpcbertoldo <24547377+jpcbertoldo@users.noreply.github.com> * add stats tests and test it Signed-off-by: jpcbertoldo <24547377+jpcbertoldo@users.noreply.github.com> * change the meaning of AUPIMO.num_thresh Signed-off-by: jpcbertoldo <24547377+jpcbertoldo@users.noreply.github.com> * interface to format pairwise test results Signed-off-by: jpcbertoldo <24547377+jpcbertoldo@users.noreply.github.com> * improve doc Signed-off-by: jpcbertoldo <24547377+jpcbertoldo@users.noreply.github.com> * add optional `paths` to result objects and some minor fixes and refactors Signed-off-by: jpcbertoldo <24547377+jpcbertoldo@users.noreply.github.com> * remove frozen from dataclasses and some done todos Signed-off-by: jpcbertoldo <24547377+jpcbertoldo@users.noreply.github.com> * review headers Signed-off-by: jpcbertoldo <24547377+jpcbertoldo@users.noreply.github.com> * doc modifs Signed-off-by: jpcbertoldo <24547377+jpcbertoldo@users.noreply.github.com> * refactor `score_less_than_thresh` in `_binclf_one_curve_python` Signed-off-by: jpcbertoldo <24547377+jpcbertoldo@users.noreply.github.com> * correct license comments Signed-off-by: jpcbertoldo <24547377+jpcbertoldo@users.noreply.github.com> * fix doc Signed-off-by: jpcbertoldo <24547377+jpcbertoldo@users.noreply.github.com> * numba as extra requirement Signed-off-by: jpcbertoldo <24547377+jpcbertoldo@users.noreply.github.com> * refactor copyrights from jpcbertoldo Signed-off-by: jpcbertoldo <24547377+jpcbertoldo@users.noreply.github.com> * remove from __future__ import annotations Signed-off-by: jpcbertoldo <24547377+jpcbertoldo@users.noreply.github.com> * refactor validations names Signed-off-by: jpcbertoldo <24547377+jpcbertoldo@users.noreply.github.com> * dedupe file path validation Signed-off-by: jpcbertoldo <24547377+jpcbertoldo@users.noreply.github.com> * fix tests Signed-off-by: jpcbertoldo <24547377+jpcbertoldo@users.noreply.github.com> * Add todo Signed-off-by: jpcbertoldo <24547377+jpcbertoldo@users.noreply.github.com> * refactor enums Signed-off-by: jpcbertoldo <24547377+jpcbertoldo@users.noreply.github.com> * only logger.warning Signed-off-by: jpcbertoldo <24547377+jpcbertoldo@users.noreply.github.com> * refactor test imports Signed-off-by: jpcbertoldo <24547377+jpcbertoldo@users.noreply.github.com> * refactor docs Signed-off-by: jpcbertoldo <24547377+jpcbertoldo@users.noreply.github.com> * refactor some docs Signed-off-by: jpcbertoldo <24547377+jpcbertoldo@users.noreply.github.com> * correct pre commit errors Signed-off-by: jpcbertoldo <24547377+jpcbertoldo@users.noreply.github.com> * remove author tag Signed-off-by: jpcbertoldo <24547377+jpcbertoldo@users.noreply.github.com> * add thrid party program Signed-off-by: jpcbertoldo <24547377+jpcbertoldo@users.noreply.github.com> * Update src/anomalib/metrics/per_image/pimo.py * move HAS_NUMBA Signed-off-by: jpcbertoldo <24547377+jpcbertoldo@users.noreply.github.com> * remove PIMOSharedFPRMetric Signed-off-by: jpcbertoldo <24547377+jpcbertoldo@users.noreply.github.com> * make torchmetrics compute avg by dft Signed-off-by: jpcbertoldo <24547377+jpcbertoldo@users.noreply.github.com> * pre-commit hooks corrections Signed-off-by: jpcbertoldo <24547377+jpcbertoldo@users.noreply.github.com> * correct numpy.trapezoid Signed-off-by: jpcbertoldo <24547377+jpcbertoldo@users.noreply.github.com> --------- Signed-off-by: jpcbertoldo <24547377+jpcbertoldo@users.noreply.github.com> Co-authored-by: Samet Akcay <samet.akcay@intel.com> * 🗑️ Remove numba (#2313) * remove numba Signed-off-by: Ashwin Vaidya <ashwinnitinvaidya@gmail.com> * fix pre-commit checks Signed-off-by: Ashwin Vaidya <ashwinnitinvaidya@gmail.com> * add third-party-programs.txt Signed-off-by: Ashwin Vaidya <ashwinnitinvaidya@gmail.com> --------- Signed-off-by: Ashwin Vaidya <ashwinnitinvaidya@gmail.com> * 🗑️ Remove unused methods (#2315) * remove numba Signed-off-by: Ashwin Vaidya <ashwinnitinvaidya@gmail.com> * fix pre-commit checks Signed-off-by: Ashwin Vaidya <ashwinnitinvaidya@gmail.com> * remove all unused methods Signed-off-by: Ashwin Vaidya <ashwinnitinvaidya@gmail.com> --------- Signed-off-by: Ashwin Vaidya <ashwinnitinvaidya@gmail.com> * PIMO: Port Numpy → Torch (#2316) * remove numba Signed-off-by: Ashwin Vaidya <ashwinnitinvaidya@gmail.com> * fix pre-commit checks Signed-off-by: Ashwin Vaidya <ashwinnitinvaidya@gmail.com> * remove all unused methods Signed-off-by: Ashwin Vaidya <ashwinnitinvaidya@gmail.com> * replace numpy with torch Signed-off-by: Ashwin Vaidya <ashwinnitinvaidya@gmail.com> --------- Signed-off-by: Ashwin Vaidya <ashwinnitinvaidya@gmail.com> * 🔨Refactor methods across files (#2321) * remove numba Signed-off-by: Ashwin Vaidya <ashwinnitinvaidya@gmail.com> * fix pre-commit checks Signed-off-by: Ashwin Vaidya <ashwinnitinvaidya@gmail.com> * remove all unused methods Signed-off-by: Ashwin Vaidya <ashwinnitinvaidya@gmail.com> * replace numpy with torch Signed-off-by: Ashwin Vaidya <ashwinnitinvaidya@gmail.com> * refactor code Signed-off-by: Ashwin Vaidya <ashwinnitinvaidya@gmail.com> * refactor move functional inside update remove path from the metric * Add changes from comments Signed-off-by: Ashwin Vaidya <ashwinnitinvaidya@gmail.com> --------- Signed-off-by: Ashwin Vaidya <ashwinnitinvaidya@gmail.com> * Remove model to model comparison (#2325) * rename to pimo Signed-off-by: Ashwin Vaidya <ashwinnitinvaidya@gmail.com> * minor refactor Signed-off-by: Ashwin Vaidya <ashwinnitinvaidya@gmail.com> * remove model to model comparison Signed-off-by: Ashwin Vaidya <ashwinnitinvaidya@gmail.com> * fix test Signed-off-by: Ashwin Vaidya <ashwinnitinvaidya@gmail.com> * PR comments Signed-off-by: Ashwin Vaidya <ashwinnitinvaidya@gmail.com> * Minor refactor Signed-off-by: Ashwin Vaidya <ashwinnitinvaidya@gmail.com> --------- Signed-off-by: Ashwin Vaidya <ashwinnitinvaidya@gmail.com> * PR comments Signed-off-by: Ashwin Vaidya <ashwinnitinvaidya@gmail.com> * Remove unused enums Signed-off-by: Ashwin Vaidya <ashwinnitinvaidya@gmail.com> * update doc strings Signed-off-by: Ashwin Vaidya <ashwinnitinvaidya@gmail.com> * update param names Signed-off-by: Ashwin Vaidya <ashwinnitinvaidya@gmail.com> * add aupimo basic usage tutorial notebook (#2330) * add aupimo basic usage tutorial notebook Signed-off-by: jpcbertoldo <24547377+jpcbertoldo@users.noreply.github.com> * update scipy import Signed-off-by: jpcbertoldo <24547377+jpcbertoldo@users.noreply.github.com> * add cite us Signed-off-by: jpcbertoldo <24547377+jpcbertoldo@users.noreply.github.com> * minor Signed-off-by: jpcbertoldo <24547377+jpcbertoldo@users.noreply.github.com> * modify texts and add illustration Signed-off-by: jpcbertoldo <24547377+jpcbertoldo@users.noreply.github.com> * udpate working dir Signed-off-by: jpcbertoldo <24547377+jpcbertoldo@users.noreply.github.com> --------- Signed-off-by: jpcbertoldo <24547377+jpcbertoldo@users.noreply.github.com> --------- Signed-off-by: jpcbertoldo <24547377+jpcbertoldo@users.noreply.github.com> Signed-off-by: Ashwin Vaidya <ashwinnitinvaidya@gmail.com> Co-authored-by: Joao P C Bertoldo <24547377+jpcbertoldo@users.noreply.github.com> Co-authored-by: Samet Akcay <samet.akcay@intel.com> * Makes batch size dynamic (#2339) Made batch dimension of ONNX export dynamic when specifying input shape. * Add pimo tutorial advanced i (fixed) (#2336) * uset all padim features to make it deterministic Signed-off-by: jpcbertoldo <24547377+jpcbertoldo@users.noreply.github.com> * add aupimo notebook advanced i Signed-off-by: jpcbertoldo <24547377+jpcbertoldo@users.noreply.github.com> * update readme Signed-off-by: jpcbertoldo <24547377+jpcbertoldo@users.noreply.github.com> * modify changelog Signed-off-by: jpcbertoldo <24547377+jpcbertoldo@users.noreply.github.com> * correct readme Signed-off-by: jpcbertoldo <24547377+jpcbertoldo@users.noreply.github.com> * correct again Signed-off-by: jpcbertoldo <24547377+jpcbertoldo@users.noreply.github.com> * minor corrections Signed-off-by: jpcbertoldo <24547377+jpcbertoldo@users.noreply.github.com> --------- Signed-off-by: jpcbertoldo <24547377+jpcbertoldo@users.noreply.github.com> * Pimo tutorials/02 advanced ii (#2347) * uset all padim features to make it deterministic Signed-off-by: jpcbertoldo <24547377+jpcbertoldo@users.noreply.github.com> * add aupimo notebook advanced i Signed-off-by: jpcbertoldo <24547377+jpcbertoldo@users.noreply.github.com> * update readme Signed-off-by: jpcbertoldo <24547377+jpcbertoldo@users.noreply.github.com> * modify changelog Signed-off-by: jpcbertoldo <24547377+jpcbertoldo@users.noreply.github.com> * correct readme Signed-off-by: jpcbertoldo <24547377+jpcbertoldo@users.noreply.github.com> * correct again Signed-off-by: jpcbertoldo <24547377+jpcbertoldo@users.noreply.github.com> * minor corrections Signed-off-by: jpcbertoldo <24547377+jpcbertoldo@users.noreply.github.com> * add aupimo notebook advanced ii (pimo curve and integration bounds) Signed-off-by: jpcbertoldo <24547377+jpcbertoldo@users.noreply.github.com> * fix links Signed-off-by: jpcbertoldo <24547377+jpcbertoldo@users.noreply.github.com> * correct change log Signed-off-by: jpcbertoldo <24547377+jpcbertoldo@users.noreply.github.com> --------- Signed-off-by: jpcbertoldo <24547377+jpcbertoldo@users.noreply.github.com> * Create epic.yaml * 🔨 Update the issue templates (#2363) * Update epic.yaml * Update epic.yaml * Update epic.yaml * Update epic.yaml * Update task.yaml * Create user_story.yaml * Update epic.yaml * Pimo tutorials/03 advanced iii (#2348) * add aupimo notebook advanced iii (aupimo score of a random model) Signed-off-by: jpcbertoldo <24547377+jpcbertoldo@users.noreply.github.com> * add cite us Signed-off-by: jpcbertoldo <24547377+jpcbertoldo@users.noreply.github.com> * update notebooks readme Signed-off-by: jpcbertoldo <24547377+jpcbertoldo@users.noreply.github.com> --------- Signed-off-by: jpcbertoldo <24547377+jpcbertoldo@users.noreply.github.com> Co-authored-by: Samet Akcay <samet.akcay@intel.com> * 🔨 Deprecate try import and replace it with Lightning's package_available (#2373) Replace try_import with lightnings package_available function Signed-off-by: Samet Akcay <samet.akcay@intel.com> * Refactor folder3d to avoid complex-structure (C901) issue (#2185) * Refactored-make_folder3d_dataset-ruff-error-C901 (#1926) Signed-off-by: sahusiddharth <siddharth.sahu@plaksha.edu.in> * Simplify folder 3d dataset (#2184) --------- Signed-off-by: sahusiddharth <siddharth.sahu@plaksha.edu.in> Co-authored-by: Siddharth Sahu <112792547+sahusiddharth@users.noreply.github.com> --------- Signed-off-by: dependabot[bot] <support@github.com> Signed-off-by: Samet Akcay <samet.akcay@intel.com> Signed-off-by: Blaz Rolih <blaz.rolih@gmail.com> Signed-off-by: jpcbertoldo <24547377+jpcbertoldo@users.noreply.github.com> Signed-off-by: Ashwin Vaidya <ashwinnitinvaidya@gmail.com> Signed-off-by: sahusiddharth <siddharth.sahu@plaksha.edu.in> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> Co-authored-by: Blaž Rolih <61357777+blaz-r@users.noreply.github.com> Co-authored-by: Ashwin Vaidya <ashwin.vaidya@intel.com> Co-authored-by: Joao P C Bertoldo <24547377+jpcbertoldo@users.noreply.github.com> Co-authored-by: Marcus Pertlwieser <116986601+Marcus1506@users.noreply.github.com> Co-authored-by: Siddharth Sahu <112792547+sahusiddharth@users.noreply.github.com>
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