Merge pull request #468 from open2c/release-0.6.0

Release: version 0.6.0

CHANGELOG.md

@@ -1,10 +1,25 @@
 # Release notes
 
-## [Upcoming release](https://github.com/open2c/cooltools/compare/v0.5.4...HEAD)
+## [Upcoming release](https://github.com/open2c/cooltools/compare/v0.6.0...HEAD)
 
-* snipping: fix spurious nan->0 conversion of bad bins in on-diagonal pileups
+## [v0.6.0](https://github.com/open2c/cooltools/compare/v0.5.4...v0.6.0)
+
+### New features
+* New function/tool `rearrange_cooler` to reorder/subset/flip regions of the genome in a cooler
+* New test dataset for micro-C from hESCs
+
+### API changes
 * snipping: reorder the axes of the output snipper array to (snippet_idx, i, j).
 
+### Maintenance
+
+* snipping: fix spurious nan->0 conversion of bad bins in on-diagonal pileups
+* snipping: fix snipping without provided view
+* snipping: fix for storing the stack in a file
+* virtual4c: fix for the case when viewpoint has no contacts
+* fix: Fix numba deprecation warnings by adding `nopython=True`
+* Other small bugfixes
+
 ## [v0.5.4](https://github.com/open2c/cooltools/compare/v0.5.3...v0.5.4)
 
 ### Maintenance

cooltools/__init__.py

@@ -11,7 +11,7 @@
 """
 import logging
 
-__version__ = "0.5.4"
+__version__ = "0.6.0"
 
 from . import lib