updated figures

onermustafaumit · Feb 5, 2022 · b9f2301 · b9f2301
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Showing 13 changed files with 5 additions and 5 deletions.
diff --git a/README.md b/README.md
@@ -206,15 +206,15 @@ saved_metrics
 To plot training loss over the epochs:
 
 ```console
-python plot_train_metrics.py saved_metrics/step_train_metrics__2022_01_24__22_09_12.txt
+python plot_train_metrics.py --data_file saved_metrics/step_train_metrics__2022_01_24__22_09_12.txt
 ```
 
 <img src="_images/step_train_metrics__2022_01_24__22_09_12.png" alt="alt text" width="300"/>
 
 To plot precision and recall on the validation set over the epochs:
 
 ```console
-python plot_valid_metrics.py saved_metrics/step_valid_metrics__2022_01_24__22_09_12.txt
+python plot_valid_metrics.py --data_file saved_metrics/step_valid_metrics__2022_01_24__22_09_12.txt
 ```
 
 <img src="_images/step_valid_metrics__2022_01_24__22_09_12.png" alt="alt text" width="600"/>

diff --git a/_images/Mask_R-CNN.png b/_images/Mask_R-CNN.png
diff --git a/_images/ROC__2022_01_25__19_37_54__100.png b/_images/ROC__2022_01_25__19_37_54__100.png
diff --git a/_images/WSI_annotation2.png b/_images/WSI_annotation2.png
diff --git a/_images/cropped_patches5.png b/_images/cropped_patches5.png
diff --git a/_images/mask_predictions.png b/_images/mask_predictions.png
diff --git a/_images/multi-lens_neural_machine.png b/_images/multi-lens_neural_machine.png
diff --git a/_images/step_loss_metrics__2022_01_25__19_37_54.png b/_images/step_loss_metrics__2022_01_25__19_37_54.png
diff --git a/_images/step_train_metrics__2022_01_24__22_09_12.png b/_images/step_train_metrics__2022_01_24__22_09_12.png
diff --git a/_images/step_valid_metrics__2022_01_24__22_09_12.png b/_images/step_valid_metrics__2022_01_24__22_09_12.png
diff --git a/gland_classification/four_resolutions_model/plot_metrics.py b/gland_classification/four_resolutions_model/plot_metrics.py
@@ -73,7 +73,7 @@ def moving_avg_filter(data_arr, w):
 plt.legend(labelspacing=.1,columnspacing=.5, handletextpad=0.5, fontsize=8)
 
 fig.subplots_adjust(left=0.13, bottom=0.15, right=0.99, top=0.99, wspace=0.20 ,hspace=0.20 )
-fig.savefig('{}.png'.format(FLAGS.data_file[:-4]),dpi=200,transparent=True)
+fig.savefig('{}.png'.format(FLAGS.data_file[:-4]),dpi=200,transparent=False)
 
 plt.show()
 

diff --git a/gland_segmentation/mask_rcnn/plot_train_metrics.py b/gland_segmentation/mask_rcnn/plot_train_metrics.py
@@ -49,6 +49,6 @@ def moving_avg_filter(data_arr, w):
 plt.legend()
 
 fig.subplots_adjust(left=0.12, bottom=0.15, right=0.98, top=0.98, wspace=0.20 ,hspace=0.20 )
-fig.savefig('{}.png'.format(FLAGS.data_file[:-4]),dpi=200,transparent=True)
+fig.savefig('{}.png'.format(FLAGS.data_file[:-4]),dpi=200,transparent=False)
 
 plt.show()
diff --git a/gland_segmentation/mask_rcnn/plot_valid_metrics.py b/gland_segmentation/mask_rcnn/plot_valid_metrics.py
@@ -67,7 +67,7 @@ def moving_avg_filter(data_arr, w):
 # plt.tight_layout()
 
 fig.subplots_adjust(left=0.07, bottom=0.15, right=0.99, top=0.91, wspace=0.20 ,hspace=0.20 )
-fig.savefig('{}.png'.format(FLAGS.data_file[:-4]),dpi=200,transparent=True)
+fig.savefig('{}.png'.format(FLAGS.data_file[:-4]),dpi=200,transparent=False)
 
 plt.show()