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Datasets and models for medical concept normalization (MCN) in English and German. Results of Bachelor Thesis about MCN using BERT / SBERT.

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medical-concept-normalization

work in progress

Getting Started

Setup your conda environment using:

conda env create -f ./env.yml
conda activate mcn

Datasets

The data folder contains code and assets to work with training and test data from various public datasets as well as custom ones.

SMM4H (2017)

see folder data/smm4h

Models

English

mcn-en-smm4h

see here

mcn-en-smm4h

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Datasets and models for medical concept normalization (MCN) in English and German. Results of Bachelor Thesis about MCN using BERT / SBERT.

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