Merge pull request #3134 from obophenotype/fix-allen-ontologies

Fix the Allen ontologies used in composite-metazoan
obophenotype · Dec 7, 2023 · 3ac4c88 · 3ac4c88
2 parents e059504 + 7353e84
commit 3ac4c88
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Showing 13 changed files with 134,278 additions and 23,389 deletions.
diff --git a/src/ontology/bridge/bridges.rules.m4 b/src/ontology/bridge/bridges.rules.m4
@@ -6,15 +6,15 @@ prefix BFO:       <http://purl.obolibrary.org/obo/BFO_>
 prefix BSPO:      <http://purl.obolibrary.org/obo/BSPO_>
 prefix CARO:      <http://purl.obolibrary.org/obo/CARO_>
 prefix CL:        <http://purl.obolibrary.org/obo/CL_>
-prefix DHBA:      <http://purl.obolibrary.org/obo/DHBA_>
+prefix DHBA:      <https://purl.brain-bican.org/ontology/dhbao/DHBA_>
 prefix EHDAA2:    <http://purl.obolibrary.org/obo/EHDAA2_>
 prefix EMAPA:     <http://purl.obolibrary.org/obo/EMAPA_>
 prefix FBbt:      <http://purl.obolibrary.org/obo/FBbt_>
 prefix FBdv:      <http://purl.obolibrary.org/obo/FBdv_>
 prefix FMA:       <http://purl.obolibrary.org/obo/FMA_>
 prefix GO:        <http://purl.obolibrary.org/obo/GO_>
 prefix HAO:       <http://purl.obolibrary.org/obo/HAO_>
-prefix HBA:       <http://purl.obolibrary.org/obo/HBA_>
+prefix HBA:       <https://purl.brain-bican.org/ontology/hbao/HBA_>
 prefix HsapDv:    <http://purl.obolibrary.org/obo/HsapDv_>
 prefix IAO:       <http://purl.obolibrary.org/obo/IAO_>
 prefix KUPO:      <http://purl.obolibrary.org/obo/KUPO_>
@@ -25,7 +25,7 @@ prefix NCIT:      <http://purl.obolibrary.org/obo/NCIT_>
 prefix OG:        <http://purl.obolibrary.org/obo/OG_>
 prefix OGES:      <http://purl.obolibrary.org/obo/OGES_>
 prefix OIO:       <http://www.geneontology.org/formats/oboInOwl#>
-prefix PBA:       <http://purl.obolibrary.org/obo/PBA_>
+prefix PBA:       <https://purl.brain-bican.org/ontology/pbao/PBA_>
 prefix RO:        <http://purl.obolibrary.org/obo/RO_>
 prefix SCTID:     <http://purl.obolibrary.org/obo/SCTID_>
 prefix SPD:       <http://purl.obolibrary.org/obo/SPD_>

diff --git a/src/ontology/bridge/uberon-bridge-to-dhba.owl b/src/ontology/bridge/uberon-bridge-to-dhba.owl
diff --git a/src/ontology/bridge/uberon-bridge-to-hba.owl b/src/ontology/bridge/uberon-bridge-to-hba.owl
diff --git a/src/ontology/bridge/uberon-bridge-to-pba.owl b/src/ontology/bridge/uberon-bridge-to-pba.owl
diff --git a/src/ontology/catalog-v001.xml b/src/ontology/catalog-v001.xml
@@ -4,18 +4,18 @@
       <uri name="http://purl.obolibrary.org/obo/ceph.owl" uri="imports/local-ceph.owl"/>
       <uri name="http://purl.obolibrary.org/obo/cl.owl" uri="imports/local-cl.owl"/>
       <uri name="http://purl.obolibrary.org/obo/cteno.owl" uri="imports/local-cteno.owl"/>
-      <uri name="http://purl.obolibrary.org/obo/dhba.owl" uri="imports/local-allen-dhba.obo"/>
-      <uri name="http://purl.obolibrary.org/obo/dmba.owl" uri="imports/local-allen-dmba.obo"/>
+      <uri name="http://purl.obolibrary.org/obo/dhba.owl" uri="imports/local-allen-dhba.owl"/>
+      <uri name="http://purl.obolibrary.org/obo/dmba.owl" uri="imports/local-allen-dmba.owl"/>
       <uri name="http://purl.obolibrary.org/obo/ehdaa2.owl" uri="imports/local-ehdaa2.owl"/>
       <uri name="http://purl.obolibrary.org/obo/emapa.owl" uri="imports/local-emapa.owl"/>
       <uri name="http://purl.obolibrary.org/obo/fbbt.owl" uri="imports/local-fbbt.owl"/>
       <uri name="http://purl.obolibrary.org/obo/fbdv.owl" uri="imports/local-fbdv.owl"/>
-      <uri name="http://purl.obolibrary.org/obo/hba.owl" uri="imports/local-allen-hba.obo"/>
+      <uri name="http://purl.obolibrary.org/obo/hba.owl" uri="imports/local-allen-hba.owl"/>
       <uri name="http://purl.obolibrary.org/obo/hsapdv.owl" uri="imports/local-hsapdv.owl"/>
       <uri name="http://purl.obolibrary.org/obo/ma.owl" uri="imports/local-ma.owl"/>
-      <uri name="http://purl.obolibrary.org/obo/mba.owl" uri="imports/local-allen-mba.obo"/>
+      <uri name="http://purl.obolibrary.org/obo/mba.owl" uri="imports/local-allen-mba.owl"/>
       <uri name="http://purl.obolibrary.org/obo/mmusdv.owl" uri="imports/local-mmusdv.owl"/>
-      <uri name="http://purl.obolibrary.org/obo/pba.owl" uri="imports/local-allen-pba.obo"/>
+      <uri name="http://purl.obolibrary.org/obo/pba.owl" uri="imports/local-allen-pba.owl"/>
       <uri name="http://purl.obolibrary.org/obo/poro.owl" uri="imports/local-poro.owl"/>
       <uri name="http://purl.obolibrary.org/obo/uberon/bridge/cl-bridge-to-ehdaa2.owl" uri="bridge/cl-bridge-to-ehdaa2.owl"/>
       <uri name="http://purl.obolibrary.org/obo/uberon/bridge/cl-bridge-to-emapa.owl" uri="bridge/cl-bridge-to-emapa.owl"/>