Replace type definition for abbreviation synonyms (#3082)

* Replace type definition for abbreviation synonyms Closes #3079 by replacing the ad-hod "abbreviation" synonym type definition with the equivalent, externally defined OMO:0003000 * Update uberon-edit.obo * update abbreviation annotation in sparql_test check * normalize uberon-edit * remove `synonymtypedef: ABBREVIATION` in uberon-edit * lower missing_synonymtype_declaration's severity to WARN --------- Co-authored-by: Anita Caron <anitacaron@users.noreply.github.com> Co-authored-by: Anita Caron <anitac@ebi.ac.uk>
obophenotype · Oct 26, 2023 · 276ae33 · 276ae33
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diff --git a/src/ontology/profile.txt b/src/ontology/profile.txt
@@ -27,6 +27,6 @@ ERROR	equivalent_class_axiom_no_genus
 ERROR	illegal_use_of_built_in_vocabulary
 ERROR	invalid_entity_uri
 ERROR	missing_subset_declaration
-ERROR	missing_synonymtype_declaration
+WARN	missing_synonymtype_declaration
 ERROR	misused_replaced_by
 ERROR	multiple_equivalent_class_definitions