Initial commit

.devcontainer/Dockerfile

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+# See here for image contents: https://github.com/microsoft/vscode-dev-containers/tree/v0.245.2/containers/codespaces-linux/.devcontainer/base.Dockerfile
+
+FROM mcr.microsoft.com/vscode/devcontainers/universal:2-focal
+
+# [Optional] Uncomment this section to install additional OS packages.
+# RUN apt-get update && export DEBIAN_FRONTEND=noninteractive \
+#     && apt-get -y install --no-install-recommends <your-package-list-here>
+RUN apt-get update && apt-get -y install --no-install-recommends \
+   python3.8-venv \
+   gcc 
+
+ARG USER="codespace"
+ARG VENV_PATH="/home/${USER}/venv"
+COPY requirements.txt /tmp/
+COPY Makefile /tmp/
+RUN su $USER -c "/usr/bin/python3 -m venv /home/${USER}/venv" \
+   && su $USER -c "${VENV_PATH}/bin/pip --disable-pip-version-check --no-cache-dir install -r /tmp/requirements.txt" \
+   && rm -rf /tmp/requirements.txt 
+

.devcontainer/devcontainer.json

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+// For format details, see https://aka.ms/devcontainer.json. For config options, see the README at:
+// https://github.com/microsoft/vscode-dev-containers/tree/v0.245.2/containers/codespaces-linux
+{
+	"name": "GitHub Codespaces (Default)",
+
+	"build": {
+		"dockerfile": "Dockerfile",
+		"context": ".."
+	},
+	"features": {
+		"ghcr.io/devcontainers/features/nvidia-cuda:1": { 
+		  "installCudnn": true
+		}
+	  },
+
+	// Configure tool-specific properties.
+	"customizations": {
+		// Configure properties specific to VS Code.
+		"vscode": {
+			// Set *default* container specific settings.json values on container create.
+			"settings": { 
+				"go.toolsManagement.checkForUpdates": "local",
+				"go.useLanguageServer": true,
+				"go.gopath": "/go",
+				"python.defaultInterpreterPath": "/home/codespace/venv/bin/python",
+				"python.linting.enabled": true,
+				"python.linting.pylintEnabled": true,
+				"python.formatting.autopep8Path": "/home/codespace/venv/bin/autopep8",
+				"python.formatting.blackPath": "/home/codespace/venv/bin/black",
+				"python.formatting.yapfPath": "/home/codespace/venv/bin/yapf",
+				"python.linting.banditPath": "/home/codespace/venv/bin/bandit",
+				"python.linting.flake8Path": "/home/codespace/venv/bin/flake8",
+				"python.linting.mypyPath": "/home/codespace/venv/bin/mypy",
+				"python.linting.pycodestylePath": "/home/codespace/venv/bin/pycodestyle",
+				"python.linting.pydocstylePath": "/home/codespace/venv/bin/pydocstyle",
+				"python.linting.pylintPath": "/home/codespace/venv/bin/pylint",
+				"lldb.executable": "/usr/bin/lldb",
+				"files.watcherExclude": {
+					"**/target/**": true
+				}
+			},
+
+			// Add the IDs of extensions you want installed when the container is created.
+			"extensions": [
+				"GitHub.vscode-pull-request-github",
+				"GitHub.copilot-nightly",
+				"GitHub.copilot-labs",
+				"ms-azuretools.vscode-docker",
+				"ms-toolsai.jupyter",
+				"ms-toolsai.jupyter-keymap",
+				"ms-toolsai.jupyter-renderers",
+				"ms-python.vscode-pylance",
+				"ms-python.python",
+				"ms-vscode.makefile-tools",
+				"github.vscode-github-actions",
+				"GitHub.copilot-chat"
+			]
+		}
+	},
+
+	"remoteUser": "codespace",
+
+	"overrideCommand": false,
+
+	"mounts": ["source=codespaces-linux-var-lib-docker,target=/var/lib/docker,type=volume"],
+
+	"runArgs": [
+		"--cap-add=SYS_PTRACE",
+		"--security-opt",
+		"seccomp=unconfined",
+		"--privileged",
+		"--init"
+	],
+
+	// Use 'forwardPorts' to make a list of ports inside the container available locally.
+	// "forwardPorts": [],
+
+	// "oryx build" will automatically install your dependencies and attempt to build your project
+	//"postCreateCommand": "oryx build -p virtualenv_name=.venv --log-file /tmp/oryx-build.log --manifest-dir /tmp || echo 'Could not auto-build. Skipping.'"
+	 "postCreateCommand": "bash setup.sh"
+}

.github/workflows/cicd.yml

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+name: CI
+on:
+  push:
+    branches: ["main"]
+  pull_request:
+    branches: ["main"]
+  workflow_dispatch:
+
+jobs:
+  build:
+    runs-on: ubuntu-latest
+    steps:
+      - uses: actions/checkout@v3
+      - uses: actions/setup-python@v2
+        with:
+          python-version: 3.12
+      - name: install packages
+        run: make install
+      - name: format
+        run: make format
+      - name: lint
+        run: make lint
+      - name: test
+        env:
+          SERVER_HOSTNAME: ${{ secrets.SERVER_HOSTNAME }}
+          HTTP_PATH: ${{ secrets.HTTP_PATH }}
+          DATABRICKS_KEY: ${{ secrets.DATABRICKS_KEY }}
+        run: make test

.gitignore

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+#ignore huggingface
+summarizeApp
+#ignore fine-tuning
+test_trainer/
+
+#ignore pytorch artifacts
+data
+model.pth
+
+# Byte-compiled / optimized / DLL files
+__pycache__/
+*.py[cod]
+*$py.class
+
+# C extensions
+*.so
+
+# Distribution / packaging
+.Python
+build/
+develop-eggs/
+dist/
+downloads/
+eggs/
+.eggs/
+lib/
+lib64/
+parts/
+sdist/
+var/
+wheels/
+pip-wheel-metadata/
+share/python-wheels/
+*.egg-info/
+.installed.cfg
+*.egg
+MANIFEST
+
+# PyInstaller
+#  Usually these files are written by a python script from a template
+#  before PyInstaller builds the exe, so as to inject date/other infos into it.
+*.manifest
+*.spec
+
+# Installer logs
+pip-log.txt
+pip-delete-this-directory.txt
+
+# Unit test / coverage reports
+htmlcov/
+.tox/
+.nox/
+.coverage
+.coverage.*
+.cache
+nosetests.xml
+coverage.xml
+*.cover
+*.py,cover
+.hypothesis/
+.pytest_cache/
+
+# Translations
+*.mo
+*.pot
+
+# Django stuff:
+*.log
+local_settings.py
+db.sqlite3
+db.sqlite3-journal
+
+# Flask stuff:
+instance/
+.webassets-cache
+
+# Scrapy stuff:
+.scrapy
+
+# Sphinx documentation
+docs/_build/
+
+# PyBuilder
+target/
+
+# Jupyter Notebook
+.ipynb_checkpoints
+
+# IPython
+profile_default/
+ipython_config.py
+
+# pyenv
+.python-version
+
+# pipenv
+#   According to pypa/pipenv#598, it is recommended to include Pipfile.lock in version control.
+#   However, in case of collaboration, if having platform-specific dependencies or dependencies
+#   having no cross-platform support, pipenv may install dependencies that don't work, or not
+#   install all needed dependencies.
+#Pipfile.lock
+
+# PEP 582; used by e.g. github.com/David-OConnor/pyflow
+__pypackages__/
+
+# Celery stuff
+celerybeat-schedule
+celerybeat.pid
+
+# SageMath parsed files
+*.sage.py
+
+# Environments
+.env
+.venv
+env/
+venv/
+ENV/
+env.bak/
+venv.bak/
+
+# Spyder project settings
+.spyderproject
+.spyproject
+
+# Rope project settings
+.ropeproject
+
+# mkdocs documentation
+/site
+
+# mypy
+.mypy_cache/
+.dmypy.json
+dmypy.json
+
+# Pyre type checker
+.pyre/

Dockerfile

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+FROM alpine:latest
+RUN apk update && apk add bash
+
+WORKDIR /app
+COPY repeat.sh /app

LICENSE

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+    MIT License
+
+    Copyright (c) Microsoft Corporation.
+
+    Permission is hereby granted, free of charge, to any person obtaining a copy
+    of this software and associated documentation files (the "Software"), to deal
+    in the Software without restriction, including without limitation the rights
+    to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
+    copies of the Software, and to permit persons to whom the Software is
+    furnished to do so, subject to the following conditions:
+
+    The above copyright notice and this permission notice shall be included in all
+    copies or substantial portions of the Software.
+
+    THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
+    IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
+    FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
+    AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
+    LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
+    OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE
+    SOFTWARE

Makefile

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+install:
+	pip install --upgrade pip &&\
+		pip install -r requirements.txt
+
+test:
+	python -m pytest -vv --cov=main --cov=mylib test_*.py
+
+format:	
+	black *.py 
+
+lint:
+	#disable comment to test speed
+	#pylint --disable=R,C --ignore-patterns=test_.*?py *.py mylib/*.py
+	#ruff linting is 10-100X faster than pylint
+	ruff check *.py mylib/*.py
+
+container-lint:
+	docker run --rm -i hadolint/hadolint < Dockerfile
+
+refactor: format lint
+
+all: install lint test format
+
+generate_and_push:
+	# Create the markdown file 
+	python test_main.py  # Replace with the actual command to generate the markdown
+
+	# Add, commit, and push the generated files to GitHub
+	@if [ -n "$$(git status --porcelain)" ]; then \
+		git config --local user.email "action@github.com"; \
+		git config --local user.name "GitHub Action"; \
+		git add .; \
+		git commit -m "Add SQL log"; \
+		git push; \
+	else \
+		echo "No changes to commit. Skipping commit and push."; \
+	fi
+
+extract:
+	etl extract
+
+transform_load: 
+	etl transform_load
+
+query:
+	etl run_query 'WITH AgeStats AS (SELECT age, AVG(alcohol_use) AS avg_alcohol_use, AVG(marijuana_use) AS avg_marijuana_use FROM DrugUseDB GROUP BY age) SELECT d.age, d.n, d.alcohol_use, a.avg_alcohol_use, d.marijuana_use, a.avg_marijuana_use FROM DrugUseDB d JOIN AgeStats a ON d.age = a.age ORDER BY d.age ASC, d.n DESC;'
+
+setup_package: 
+	python setup.py develop --user