Add sample zarr of tiff converted to zarr

The OME XML reports that the channels are not interleaved.
niaid · Aug 31, 2023 · bf3b850 · bf3b850
1 parent 00c99d1
commit bf3b850
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Showing 15 changed files with 44 additions and 2 deletions.
diff --git a/test/data/OM_P1_S1_ScanOnly_1k_tiff.zarr/.zattrs b/test/data/OM_P1_S1_ScanOnly_1k_tiff.zarr/.zattrs
diff --git a/test/data/OM_P1_S1_ScanOnly_1k_tiff.zarr/.zgroup b/test/data/OM_P1_S1_ScanOnly_1k_tiff.zarr/.zgroup
diff --git a/test/data/OM_P1_S1_ScanOnly_1k_tiff.zarr/0/.zarray b/test/data/OM_P1_S1_ScanOnly_1k_tiff.zarr/0/.zarray
diff --git a/test/data/OM_P1_S1_ScanOnly_1k_tiff.zarr/0/.zattrs b/test/data/OM_P1_S1_ScanOnly_1k_tiff.zarr/0/.zattrs
diff --git a/test/data/OM_P1_S1_ScanOnly_1k_tiff.zarr/0/0/0/0/0/0 b/test/data/OM_P1_S1_ScanOnly_1k_tiff.zarr/0/0/0/0/0/0
diff --git a/test/data/OM_P1_S1_ScanOnly_1k_tiff.zarr/1/.zarray b/test/data/OM_P1_S1_ScanOnly_1k_tiff.zarr/1/.zarray
diff --git a/test/data/OM_P1_S1_ScanOnly_1k_tiff.zarr/1/.zattrs b/test/data/OM_P1_S1_ScanOnly_1k_tiff.zarr/1/.zattrs
diff --git a/test/data/OM_P1_S1_ScanOnly_1k_tiff.zarr/1/0/0/0/0/0 b/test/data/OM_P1_S1_ScanOnly_1k_tiff.zarr/1/0/0/0/0/0
diff --git a/test/data/OM_P1_S1_ScanOnly_1k_tiff.zarr/2/.zarray b/test/data/OM_P1_S1_ScanOnly_1k_tiff.zarr/2/.zarray
diff --git a/test/data/OM_P1_S1_ScanOnly_1k_tiff.zarr/2/.zattrs b/test/data/OM_P1_S1_ScanOnly_1k_tiff.zarr/2/.zattrs
diff --git a/test/data/OM_P1_S1_ScanOnly_1k_tiff.zarr/2/0/0/0/0/0 b/test/data/OM_P1_S1_ScanOnly_1k_tiff.zarr/2/0/0/0/0/0
diff --git a/test/data/OM_P1_S1_ScanOnly_1k_tiff.zarr/OME/.zattrs b/test/data/OM_P1_S1_ScanOnly_1k_tiff.zarr/OME/.zattrs
diff --git a/test/data/OM_P1_S1_ScanOnly_1k_tiff.zarr/OME/.zgroup b/test/data/OM_P1_S1_ScanOnly_1k_tiff.zarr/OME/.zgroup
diff --git a/test/data/OM_P1_S1_ScanOnly_1k_tiff.zarr/OME/METADATA.ome.xml b/test/data/OM_P1_S1_ScanOnly_1k_tiff.zarr/OME/METADATA.ome.xml
diff --git a/test/test_HedwigZarrImages.py b/test/test_HedwigZarrImages.py
@@ -21,7 +21,7 @@
 
 @pytest.fixture(
     scope="function",
-    params=["2013-1220-dA30_5-BSC-1_22_full_rec.zarr", "OM_P1_S1_ScanOnly_1k.zarr"],
+    params=["2013-1220-dA30_5-BSC-1_22_full_rec.zarr", "OM_P1_S1_ScanOnly_1k.zarr", "OM_P1_S1_ScanOnly_1k_tiff.zarr"],
 )
 def temp_zarr_path(request, tmp_path_factory, data_path):
     """Copies ZARRs to temporary directory for modification."""
@@ -36,7 +36,7 @@ def temp_zarr_path(request, tmp_path_factory, data_path):
 
 @pytest.mark.parametrize(
     "zarr_name",
-    ["2013-1220-dA30_5-BSC-1_22_full_rec.zarr", "OM_P1_S1_ScanOnly_1k.zarr"],
+    ["2013-1220-dA30_5-BSC-1_22_full_rec.zarr", "OM_P1_S1_ScanOnly_1k.zarr", "OM_P1_S1_ScanOnly_1k_tiff.zarr"],
 )
 def test_HedwigZarrImage_info(data_path, zarr_name):
     zi = HedwigZarrImages(data_path / zarr_name)