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update #228

Merged
merged 25 commits into from
Mar 13, 2023
Merged

update #228

merged 25 commits into from
Mar 13, 2023

Commits on Feb 15, 2023

  1. Merge pull request #216 from nf-core/update_3_1 

    Bambu update, bug fixes, and template update
    @yuukiiwa
    yuukiiwa authored Feb 15, 2023
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Commits on Feb 17, 2023

  1. Merge pull request #217 from nf-core/update_3_1 

    remove guppy
    @christopher-hakkaart
    christopher-hakkaart authored Feb 17, 2023
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Commits on Mar 3, 2023

  1. fix custom config for multiqc 

    Not sure this actually ever worked.
Thanks to @FranBonath for spotting the issue
    @maxulysse
    maxulysse authored Mar 3, 2023
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Commits on Mar 7, 2023

  1. Merge pull request #219 from nf-core/maxulysse-patch-1 

    fix custom config for multiqc
    @yuukiiwa
    yuukiiwa authored Mar 7, 2023
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Commits on Mar 8, 2023

  1. Update CITATIONS.md

    @yuukiiwa
    yuukiiwa authored Mar 8, 2023
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  2. Update CITATIONS.md

    @yuukiiwa
    yuukiiwa authored Mar 8, 2023
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  3. Add back demultiplexing

    @yuukiiwa
    yuukiiwa authored Mar 8, 2023
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  4. Merge pull request #221 from nf-core/update_3_1 

    Tidy documentation for 3_1
    @yuukiiwa
    yuukiiwa authored Mar 8, 2023
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Commits on Mar 9, 2023

  1. update nanoseq version

    @yuukiiwa
    yuukiiwa authored Mar 9, 2023
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  2. Update CHANGELOG.md

    @yuukiiwa
    yuukiiwa authored Mar 9, 2023
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  3. Update test.config

    @yuukiiwa
    yuukiiwa authored Mar 9, 2023
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  4. Update CHANGELOG.md

    @yuukiiwa
    yuukiiwa authored Mar 9, 2023
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  5. Update CHANGELOG.md

    @yuukiiwa
    yuukiiwa authored Mar 9, 2023
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  6. Syntax formatting of run_deseq2.r

    Daniel Schreyer authored Mar 9, 2023
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  7. Update CHANGELOG.md

    @yuukiiwa
    yuukiiwa authored Mar 9, 2023
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  8. Add files via upload

    @yuukiiwa
    yuukiiwa authored Mar 9, 2023
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  9. annotate .collate(12)

    @yuukiiwa
    yuukiiwa authored Mar 9, 2023
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  10. Merge pull request #224 from nf-core/DSchreyer-patch-1 

    Syntax formatting of run_deseq2.r
    @yuukiiwa
    yuukiiwa authored Mar 9, 2023
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  11. Merge pull request #223 from nf-core/update_3_1 

    update CHANGELOG and nextflow.config
    @yuukiiwa
    yuukiiwa authored Mar 9, 2023
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Commits on Mar 10, 2023

  1. address suggestions from Daniel

    @yuukiiwa
    yuukiiwa committed Mar 10, 2023
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  2. leaving nf-core subworkflows as it is now 

    the subworkflow is not updated
    @yuukiiwa
    yuukiiwa authored Mar 10, 2023
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  3. Merge pull request #226 from nf-core/update_3_1 

    Address Daniel's suggestions
    @yuukiiwa
    yuukiiwa authored Mar 10, 2023
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  4. small fix

    @yuukiiwa
    yuukiiwa authored Mar 10, 2023
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  5. Merge pull request #227 from nf-core/update_3_1 

    small fix
    @yuukiiwa
    yuukiiwa authored Mar 10, 2023
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  6. Merge pull request #222 from nf-core/dev 

    release 3.1 pull request
    @yuukiiwa
    yuukiiwa authored Mar 10, 2023
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