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Shaun-Regenbaum authored Oct 22, 2024
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**nf-core/methylseq** is a bioinformatics analysis pipeline used for Methylation (Bisulfite) sequencing data. It pre-processes raw data from FastQ inputs, aligns the reads and performs extensive quality-control on the results.

![image](https://github.com/user-attachments/assets/9bec0af6-1eda-4d1d-9452-9dfba136ba6e)
![image](https://github.com/Shaun-Regenbaum/methylseq/blob/dev/docs/images/metromap.png)

The pipeline is built using [Nextflow](https://www.nextflow.io), a workflow tool to run tasks across multiple compute infrastructures in a very portable manner. It uses Docker / Singularity containers making installation trivial and results highly reproducible.

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