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Update README.md
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Co-authored-by: Daniel Lundin <erik.rikard.daniel@gmail.com>
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danilodileo and erikrikarddaniel authored Oct 19, 2023
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Expand Up @@ -44,7 +44,7 @@ On release, automated continuous integration tests run the pipeline on a full-si
1. [`Eggnog`](https://github.com/eggnogdb/eggnog-mapper) -> Reformat TSV output "eggnog table"
2. [`KOfamscan`](https://github.com/takaram/kofam_scan)
3. [`HMMERsearch`](https://www.ebi.ac.uk/Tools/hmmer/search/hmmsearch) -> Ranking orfs based on HMMprofile with [`Hmmrank`](https://github.com/erikrikarddaniel/hmmrank)
11. Taxonomical annotation:
11. Taxonomic annotation:
1. [`EUKulele`](https://github.com/AlexanderLabWHOI/EUKulele) -> Reformat TSV output "Reformat_tax.R"
2. [`CAT`](https://github.com/dutilh/CAT)
12. Summary statistics table. Collect_stats.R
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