Test case for kofamscan

conf/test_kofamscan.config

@@ -0,0 +1,29 @@
+/*
+~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
+    Nextflow config file for running minimal tests
+~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
+    Defines input files and everything required to run a fast and simple pipeline test.
+
+    Use as follows:
+        nextflow run nf-core/metatdenovo -profile test_eggnog,<docker/singularity>
+
+----------------------------------------------------------------------------------------
+*/
+
+params {
+    config_profile_name        = 'Test eggnog profile'
+    config_profile_description = 'Minimal test dataset to check pipeline with eggnog function added'
+
+    // Limit resources so that this can run on GitHub Actions
+    max_cpus   = 8
+    max_memory = '24.GB'
+    max_time   = '6.h'
+
+    // Input data
+    input  = 'https://raw.githubusercontent.com/nf-core/test-datasets/metatdenovo/samplesheet/samplesheet.csv'
+
+    // parameters
+    skip_eukulele  = true
+    skip_eggnog    = true
+    skip_kofamscan = false
+}

nextflow.config

@@ -212,6 +212,7 @@ profiles {
     test_transdecoder   { includeConfig 'conf/test_transdecoder.config' }
     test_eggnog         { includeConfig 'conf/test_eggnog.config'       }
     test_eukulele       { includeConfig 'conf/test_eukulele.config'     }
+    test_kofamscan      { includeConfig 'conf/test_kofamscan.config'    }
     test_rnaspades      { includeConfig 'conf/test_rnaspades.config'    }
     gitpod {
         executor.name          = 'local'