A subdirectory for download seems needed

nf-core · Feb 8, 2024 · 4f5f0a6 · 4f5f0a6
1 parent 4dabedb
commit 4f5f0a6
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Showing 2 changed files with 5 additions and 6 deletions.
diff --git a/modules/local/eggnog/download.nf b/modules/local/eggnog/download.nf
@@ -11,21 +11,19 @@ process EGGNOG_DOWNLOAD {
     //path "eggnog_dbpath"
 
     output:
-    //path("eggnog_db")  , emit: db
-    path('./.'), emit: db
-    path('*'), emit: files
+    path("eggnog_db")  , emit: db
     path "versions.yml", emit: versions
 
     script:
     def args = task.ext.args ?: ''
-    """
 
-    #mkdir eggnog_db
+    """
+    mkdir eggnog_db
 
     download_eggnog_data.py \\
         $args \\
         -y \\
-        --data_dir .
+        --data_dir eggnog_db
 
     cat <<-END_VERSIONS > versions.yml
     "${task.process}":

diff --git a/subworkflows/local/eggnog.nf b/subworkflows/local/eggnog.nf
@@ -17,6 +17,7 @@ workflow EGGNOG {
     ch_versions = Channel.empty()
 
     if ( createdb ) {
+        // Not allowed, or?
         if ( ! file(dbpath).exists() ) {
             file(dbpath).mkdir()
         }