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Fix linting from a comment

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Output concatenated ffn files from Prokka
Fix linting from a comment #79: Issue comment #186 (comment) created by erikrikarddaniel
September 26, 2023 12:02 2s
September 26, 2023 12:02 2s
Eukulele works poorly with -resume
Fix linting from a comment #78: Issue comment #176 (comment) created by danilodileo
September 26, 2023 00:24 3s
September 26, 2023 00:24 3s
Listing db-versions in output-file/multiqc-report
Fix linting from a comment #77: Issue comment #184 (comment) created by erikrikarddaniel
September 25, 2023 12:04 3s
September 25, 2023 12:04 3s
when using EUKulele user's database error name output
Fix linting from a comment #76: Issue comment #183 (comment) created by danilodileo
September 25, 2023 07:54 3s
September 25, 2023 07:54 3s
when using EUKulele user's database error name output
Fix linting from a comment #75: Issue comment #183 (comment) created by erikrikarddaniel
September 25, 2023 07:45 3s
September 25, 2023 07:45 3s
BBNORM: Cannot run program “bgzip”
Fix linting from a comment #74: Issue comment #182 (comment) created by erikrikarddaniel
September 25, 2023 07:39 3s
September 25, 2023 07:39 3s
Assembly and orf caller prefix in column name should not be there
Fix linting from a comment #73: Issue comment #179 (comment) created by erikrikarddaniel
September 13, 2023 13:29 3s
September 13, 2023 13:29 3s
Fix filenames
Fix linting from a comment #72: Issue comment #178 (comment) created by erikrikarddaniel
August 31, 2023 05:45 2s
August 31, 2023 05:45 2s
Deal properly with download of data
Fix linting from a comment #71: Issue comment #168 (comment) created by erikrikarddaniel
August 30, 2023 17:55 2s
August 30, 2023 17:55 2s
Deal properly with download of data
Fix linting from a comment #70: Issue comment #168 (comment) created by tfalkarkea
August 30, 2023 17:54 17s
August 30, 2023 17:54 17s
Deal properly with download of data
Fix linting from a comment #69: Issue comment #168 (comment) created by erikrikarddaniel
August 30, 2023 17:47 2s
August 30, 2023 17:47 2s
Deal properly with download of data
Fix linting from a comment #68: Issue comment #168 (comment) created by tfalkarkea
August 30, 2023 16:46 3s
August 30, 2023 16:46 3s
Get a name for MultiQC based on combination of assembler and ORF caller
Fix linting from a comment #67: Issue comment #163 (comment) created by erikrikarddaniel
August 30, 2023 07:52 3s
August 30, 2023 07:52 3s
Use barrnap to filter reads
Fix linting from a comment #66: Issue comment #137 (comment) created by tfalkarkea
August 29, 2023 13:32 4s
August 29, 2023 13:32 4s
Deal properly with download of data
Fix linting from a comment #65: Issue comment #168 (comment) created by erikrikarddaniel
August 29, 2023 08:48 3s
August 29, 2023 08:48 3s
TSV table from Prokka GFF
Fix linting from a comment #64: Issue comment #164 (comment) created by erikrikarddaniel
August 29, 2023 07:45 2s
August 29, 2023 07:45 2s
Add assembler QC report
Fix linting from a comment #63: Issue comment #162 (comment) created by erikrikarddaniel
August 28, 2023 19:02 3s
August 28, 2023 19:02 3s
Use barrnap to filter reads
Fix linting from a comment #62: Issue comment #137 (comment) created by erikrikarddaniel
August 28, 2023 19:01 3s
August 28, 2023 19:01 3s
Warning messages we should deal with
Fix linting from a comment #61: Issue comment #165 (comment) created by erikrikarddaniel
August 28, 2023 17:52 2s
August 28, 2023 17:52 2s
Cosmetics: EUKULELE_DOWNLOAD reports $meta.id
Fix linting from a comment #60: Issue comment #166 (comment) created by erikrikarddaniel
August 28, 2023 17:51 2s
August 28, 2023 17:51 2s
Update local modules to new container syntax + more
Fix linting from a comment #59: Issue comment #174 (comment) created by erikrikarddaniel
August 28, 2023 17:50 3s
August 28, 2023 17:50 3s
SUM_TAXONOMY and other summary modules produces empty output with RNASpades/Prodigal
Fix linting from a comment #58: Issue comment #169 (comment) created by erikrikarddaniel
August 28, 2023 12:32 4s
August 28, 2023 12:32 4s
SUM_TAXONOMY and other summary modules produces empty output with RNASpades/Prodigal
Fix linting from a comment #57: Issue comment #169 (comment) created by erikrikarddaniel
August 28, 2023 08:06 3s
August 28, 2023 08:06 3s
SUM_TAXONOMY and other summary modules produces empty output with RNASpades/Prodigal
Fix linting from a comment #56: Issue comment #169 (comment) created by erikrikarddaniel
August 28, 2023 08:01 3s
August 28, 2023 08:01 3s
added input single_end option
Fix linting from a comment #55: Issue comment #172 (comment) created by danilodileo
August 28, 2023 07:26 3s
August 28, 2023 07:26 3s