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simplify ci.yml tasks
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BarryDigby committed Dec 12, 2022
1 parent 540a1e2 commit ca5a001
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28 changes: 0 additions & 28 deletions .github/workflows/ci.yml
Original file line number Diff line number Diff line change
Expand Up @@ -40,31 +40,3 @@ jobs:
- name: Run pipeline with test data
run: |
nextflow run ${GITHUB_WORKSPACE} -profile ${{ matrix.profile }},docker --outdir ./results
tool_test:
name: Run pipeline with each quantification tool
# Only run on push if this is the nf-core dev branch (merged PRs)
if: "${{ github.event_name != 'push' || (github.event_name == 'push' && github.repository == 'nf-core/circrna') }}"
runs-on: ubuntu-latest
strategy:
matrix:
parameters:
- "--tool circexplorer2"
- "--tool ciriquant"
- "--tool circrna_finder"
- "--tool dcc"
- "--tool find_circ"
- "--tool mapsplice"
- "--tool segemehl"
steps:
- name: Check out pipeline code
uses: actions/checkout@v3

- name: Install Nextflow
uses: nf-core/setup-nextflow@v1
with:
version: "${{ matrix.NXF_VER }}"

- name: Run pipeline with each quantification tool
run: |
nextflow run ${GITHUB_WORKSPACE} -profile test,docker --module circrna_discovery ${{ matrix.parameters }} --outdir ./results

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