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Use contrast enhancement to improve registration #23

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Description

What is this PR

  • Bug fix
  • Addition of a new feature
  • Other

Why is this PR needed?
See issue

What does this PR do?

  1. Add contrast enhancement functions

TODO: (maybe too much for 1 PR)

  1. vendor suite2p code??
  2. use vendored suite2p code to find xy shifts from non-rigid registration with contrast enhanced videos
  3. apply the shifts to the original derotated videos
  4. assess quality (neuropil subtraction? some measure of noise? TBD)
  5. continue with suite2p processing
  6. save to nwb??

References

Resolves #11

How has this PR been tested?

TODO

Is this a breaking change?

No

Does this PR require an update to the documentation?

TODO

Checklist:

  • The code has been tested locally
  • Tests have been added to cover all new functionality
  • The documentation has been updated to reflect any changes
  • The code has been formatted with pre-commit

@lauraporta
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Beyond the scope of this package.

@lauraporta lauraporta closed this Nov 28, 2024
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Contrast enhancement and registration
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