add unittest workflow

.github/workflows/tests.yml

@@ -0,0 +1,47 @@
+# This workflow will install Python dependencies, run tests and lint with a variety of Python versions
+# For more information see: https://help.github.com/actions/language-and-framework-guides/using-python-with-github-actions
+
+name: test
+
+on:
+  push:
+    branches: ["main", "development"]
+  pull_request:
+    branches: ["main", "development"]
+
+jobs:
+
+  test-ubuntu:
+
+    runs-on: ubuntu-latest
+    strategy:
+      matrix:
+        python-version: ["3.8", "3.9", "3.10"]
+        mongodb-version: ["3.6"]
+
+    steps:
+      - uses: actions/checkout@v2
+        with:
+          fetch-depth: 0
+
+      - name: Set up Python ${{ matrix.python-version }}
+        uses: actions/setup-python@v2
+        with:
+          python-version: ${{ matrix.python-version }}
+
+      - name: Start MongoDB
+          uses: supercharge/mongodb-github-action@1.10.0
+          with:
+            mongodb-version: ${{ matrix.mongodb-version }}
+
+      - name: Install python dependencies
+        run: |
+          python -m pip install --upgrade pip
+          python -m venv env
+          source env/bin/activate
+          pip install -r requirements.txt
+
+      - name: Run tests
+        run: |
+          source env/bin/activate
+          ./run_tests.sh

bad/config.py

@@ -26,7 +26,7 @@ def _to_bool(x: str) -> bool:
 DATA_PATH: Path = config("BAD_DATA_PATH", default=Path("~/").expanduser(), cast=Path)
 TEMP_PATH: Path = config(
     "BAD_TEMP_PATH",
-    default=str(Path(tempfile.gettempdir()) / "brainage-pipeline"),
+    default=str(Path(tempfile.gettempdir()) / "brainage-designer"),
     cast=Path,
 )
 

bad/process/processdb.py

@@ -4,10 +4,10 @@
 import signal
 import uuid
 import traceback
-from typing import Mapping, Any, Optional, Union, Sequence
+from typing import Mapping, Any, Optional, Union, Sequence, List
 
 import pymongo
-from pymongo.database import Collection, List
+from pymongo.database import Collection
 
 from bad.db import DatabaseMixin
 from bad import logger