Update test artifact

nadeemlab · Aug 1, 2024 · 84cf8b2 · 84cf8b2
1 parent 0586beb
commit 84cf8b2
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Showing 2 changed files with 8 additions and 9 deletions.
diff --git a/spatialprofilingtoolbox/workflow/common/squidpy.py b/spatialprofilingtoolbox/workflow/common/squidpy.py
@@ -138,12 +138,11 @@ def ripley_custom(
             raise NotImplementedError(f"Mode `{mode.s!r}` is not yet implemented.")
 
         for j in range(obs_arr.shape[0]):
-            pvalues[j] += stats_i >= obs_arr[j]
+            pvalues[j] += stats_i < obs_arr[j]
         sims[i] = stats_i
 
     pvalues /= n_simulations + 1
     # pvalues = np.minimum(pvalues, 1 - pvalues)
-    pvalues = 1 - pvalues
 
     obs_df = _reshape_res(obs_arr.T, columns=le.classes_, index=bins, var_name=cluster_key)
     sims_df = _reshape_res(sims.T, columns=np.arange(n_simulations), index=bins, var_name="simulations")

diff --git a/test/apiserver/module_tests/expected_squidpy5.json b/test/apiserver/module_tests/expected_squidpy5.json
@@ -1,12 +1,12 @@
 {
     "values": {
-        "lesion 0_1": 1.0,
-        "lesion 0_2": 1.0,
-        "lesion 0_3": 1.0,
-        "lesion 6_1": 1.0,
-        "lesion 6_2": 1.0,
-        "lesion 6_3": 1.0,
-        "lesion 6_4": 1.0
+        "lesion 0_1": 34.1,
+        "lesion 0_2": 36.5,
+        "lesion 0_3": 38.3,
+        "lesion 6_1": 52.4,
+        "lesion 6_2": 90.9,
+        "lesion 6_3": 205.5,
+        "lesion 6_4": 56.6
     },
     "is_pending": false
 }