Merge pull request #53 from divyamadala30/master

default sampleType to unknown tumor
mskcc · Mar 9, 2023 · e60ad0b · e60ad0b
2 parents 67e2e61 + e55a19f
commit e60ad0b
Showing 1 changed file with 4 additions and 1 deletion.
diff --git a/src/main/java/org/mskcc/smile/service/impl/CmoLabelGeneratorServiceImpl.java b/src/main/java/org/mskcc/smile/service/impl/CmoLabelGeneratorServiceImpl.java
@@ -386,7 +386,10 @@ private String resolveSampleTypeAbbreviation(String specimenTypeValue, String sa
 
         // if abbreviation is still not resolved then try to resolve from sample class
         CmoSampleClass sampleClass = CmoSampleClass.fromValue(cmoSampleClassValue);
-        return SAMPLE_CLASS_ABBREV_MAP.get(sampleClass);
+        if (sampleClass != null) {
+            return SAMPLE_CLASS_ABBREV_MAP.get(sampleClass);
+        }
+        return SAMPLE_CLASS_ABBREV_MAP.get(CmoSampleClass.UNKNOWN_TUMOR);
     }
 
     /**