Update cellranger_config.py

changing names for ARC/Multiome to match recipe names on sample sheet
mskcc · Jun 20, 2024 · e512fe7 · e512fe7
1 parent b4519ac
commit e512fe7
Showing 1 changed file with 1 addition and 1 deletion.
diff --git a/scripts/cellranger_config.py b/scripts/cellranger_config.py
@@ -50,7 +50,7 @@
 # 10X recipe list for different pipelines
 COUNT_FLAVORS = ["SC_Chromium-GEX-3", "SC_Chromium-GEX-5"]
 VDJ_FLAVORS = ["SC_Chromium-TCR", "SC_Chromium-BCR"]
-ARC_FLAVORS = ["SC_Chromium-Multiome", "SC_Chromium-Multiome_ATAC", "SC_Chromium-Multiome_GEX"]
+ARC_FLAVORS = ["SC_Chromium-Multiome", "SC_Chromium-Multiome-ATAC", "SC_Chromium-Multiome-GEX"]
 SPATIAL_FLAVORS = ["ST_Visium"]
 
 # we do not want to PROCESS SAIL (15500) or SCRI (12437) projects