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Update LaunchMetrics.py
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to process the genome Synthetic on DRAGEN
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darrelln32 committed Nov 18, 2024
1 parent 7956948 commit c37e159
Showing 1 changed file with 1 addition and 1 deletion.
2 changes: 1 addition & 1 deletion scripts/LaunchMetrics.py
Original file line number Diff line number Diff line change
Expand Up @@ -80,7 +80,7 @@ def launch_metrics(self, all_samples, run, project_directory):
self.dragen_rna_alignment_and_metrics(sample, run, sample_parameters, rna_directory, work_directory, fastq_list)
continue
# check to see if we need to run the samples on dragen
if any(s in sample.recipe for s in RUN_ON_DRAGEN):
if any(s in sample.recipe for s in RUN_ON_DRAGEN) or (sample.genome == "Synthetic"):
pathlib.Path(dragen_directory).mkdir(parents = True, exist_ok = True)
self.dragen(sample, run, sample_parameters, work_directory, dragen_directory, fastq_list)
continue
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