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Update LaunchMetrics.py
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getting an error with grcm39 hash table.  Will go ahead and run ChIPSeq and AmpliconSeq with BWA-MEM
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@darrelln32
darrelln32 committed Oct 30, 2023
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2 changes: 1 addition & 1 deletion scripts/LaunchMetrics.py
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# Global Variable : we do not want to process these experiments in this script
DO_NOT_PROCESS = ["10X_Genomics", "DLP"]
# These recipes will be evaluated using DRAGEN because of their larger size of fastqs
RUN_ON_DRAGEN = ["MissionBio", "SingleCellCNV", "MouseWholeGenome", "ChIPSeq", "AmpliconSeq", "HumanWholeGenome", "PombeWholeGenome"]
RUN_ON_DRAGEN = ["MissionBio", "SingleCellCNV", "MouseWholeGenome", "HumanWholeGenome", "PombeWholeGenome"]
# this list contains the headers of the columns. we will access the data using these listings
PICARD_VERSION = "2_23_2"
PICARD_JAR = "/igo/home/igo/resources/picard2.23.2/picard.jar "
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