add ORION for dlp yaml file generation

mskcc · Aug 14, 2024 · 5d8ca37 · 5d8ca37
1 parent 4e7eeb9
commit 5d8ca37
Showing 1 changed file with 1 addition and 1 deletion.
diff --git a/demux_run_dag.py b/demux_run_dag.py
@@ -159,7 +159,7 @@ def stats(ds, **kwargs):
                 fld_file = Path(fld_file_path)
                 response = requests.get(fld_endpoint, auth = ("pms", "tiagostarbuckslightbike"), verify = False)
                 fld_file.write_bytes(response.content)
-                if "FAUCI" in sequencer_and_run:
+                if "FAUCI" in sequencer_and_run or "ORION" in sequencer_and_run:
                     python_cmd = "python scripts/yaml/generate_metadata.py " + fastq_project_dir + " " + sample_sheet_path + " " + stats + " " + run_info + " " + fld_file_path + " " + project + " " + output_yaml
                 else:
                     python_cmd = "python scripts/yaml/generate_metadata.py " + fastq_project_dir + " " + sample_sheet_path + " " + stats + " " + run_info + " " + fld_file_path + " " + project + " " + output_yaml + " --revcomp_i5"