Merge pull request #13 from moka-guys/feature/v1.5.0

Update app to use duty_csv v2.5.0 (#13)

Readme.md

@@ -1,6 +1,6 @@
 # DNAnexus Duty CSV
 
-This is the DNAnexus implementation of [duty_csv v2.4.0](https://github.com/moka-guys/duty_csv/releases/tag/v2.4.0). It is intended to run at the end of all DNAnexus workflows. For further details on what the underlying script does and produces, please refer to that repository.
+This is the DNAnexus implementation of [duty_csv v2.5.0](https://github.com/moka-guys/duty_csv/releases/tag/v2.5.0). It is intended to run at the end of all DNAnexus workflows. For further details on what the underlying script does and produces, please refer to that repository.
 
 ## Inputs
 

dxapp.json

@@ -1,8 +1,8 @@
 {
-  "name": "duty_csv_v1.4.0",
+  "name": "duty_csv_v1.5.0",
   "summary": "Uses a python script to search for files required for Dry Lab transfer, creates a CSV file with URL links for the files and sends an email to MokaGuys",
   "properties": {
-    "github release": "v1.4.0"
+    "github release": "v1.5.0"
   },
   "dxapi": "1.0.0",
   "inputSpec": [

src/code.sh

@@ -10,7 +10,7 @@ function main() {
     AMAZON_PW=$(dx cat project-FQqXfYQ0Z0gqx7XG9Z2b4K43:amazon_email_server_password)
     AUTH_TOKEN=$(dx cat project-FQqXfYQ0Z0gqx7XG9Z2b4K43:mokaguys_nexus_auth_key)
 
-    # Get project ID form project name
+    # Get project ID from project name
     if (dx find projects --auth "${AUTH_TOKEN}" | grep "${project_name}");
         then
             echo "Project $project_name exists"
@@ -28,7 +28,7 @@ function main() {
 
     mkdir -p $CSV_OUTDIR $HTML_OUTDIR $LOGFILE_OUTDIR $TXT_OUTDIR # Create in and out dirs
 
-    DOCKER_FILEID='project-ByfFPz00jy1fk6PjpZ95F27J:file-GkkzFq00jy1j4G1pPJQFyjkx'
+    DOCKER_FILEID='project-ByfFPz00jy1fk6PjpZ95F27J:file-Gp74Jp00jy1v1ZjP0pyBB05f'
     dx download $DOCKER_FILEID
     DOCKER_FILENAME=$(dx describe $DOCKER_FILEID --name)
     # --force-local required as if tarfile name contains a colon it tries to resolve the tarfile to a machine name