Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Jump to bottom

Voting methods for feature ranking in efs #112

Merged
merged 75 commits into from
Nov 30, 2024
Merged

Voting methods for feature ranking in efs #112

merged 75 commits into from
Nov 30, 2024

Commits on Jul 31, 2024

  1. add stability selection article

    @bblodfon
    bblodfon committed Jul 31, 2024
    Configuration menu
    Copy the full SHA
    a5d1b38 View commit details
    Browse the repository at this point in the history

  2. add Rcpp code for approval voting feature ranking method

    @bblodfon
    bblodfon committed Jul 31, 2024
    Configuration menu
    Copy the full SHA
    4cc3815 View commit details
    Browse the repository at this point in the history

  3. add citation

    @bblodfon
    bblodfon committed Jul 31, 2024
    Configuration menu
    Copy the full SHA
    21ae7d7 View commit details
    Browse the repository at this point in the history

  4. extra check during init()

    @bblodfon
    bblodfon committed Jul 31, 2024
    Configuration menu
    Copy the full SHA
    ccffa4b View commit details
    Browse the repository at this point in the history

  5. update doc + use the Rcpp interface for approval voting

    @bblodfon
    bblodfon committed Jul 31, 2024
    Configuration menu
    Copy the full SHA
    108ddc2 View commit details
    Browse the repository at this point in the history

  6. add templates for params in ArchiveBatchFSelect + updocs

    @bblodfon
    bblodfon committed Jul 31, 2024
    Configuration menu
    Copy the full SHA
    589df2e View commit details
    Browse the repository at this point in the history

  7. use testthat expectations (not checkmate ones!)

    @bblodfon
    bblodfon committed Jul 31, 2024
    Configuration menu
    Copy the full SHA
    e520c77 View commit details
    Browse the repository at this point in the history

  8. add test for newly implemented voting methods

    @bblodfon
    bblodfon committed Jul 31, 2024
    Configuration menu
    Copy the full SHA
    0ecc618 View commit details
    Browse the repository at this point in the history

  9. update test for av

    @bblodfon
    bblodfon committed Jul 31, 2024
    Configuration menu
    Copy the full SHA
    2622c96 View commit details
    Browse the repository at this point in the history

  10. fix note

    @bblodfon
    bblodfon committed Jul 31, 2024
    Configuration menu
    Copy the full SHA
    97f21c4 View commit details
    Browse the repository at this point in the history

Commits on Aug 1, 2024

  1. refactor AV_rcpp, add SAV_rcpp

    @bblodfon
    bblodfon committed Aug 1, 2024
    Configuration menu
    Copy the full SHA
    f84f91c View commit details
    Browse the repository at this point in the history

  2. add norm_score, and SAV R function

    @bblodfon
    bblodfon committed Aug 1, 2024
    Configuration menu
    Copy the full SHA
    3614d93 View commit details
    Browse the repository at this point in the history

  3. add sav, improve doc

    @bblodfon
    bblodfon committed Aug 1, 2024
    Configuration menu
    Copy the full SHA
    0a1eb49 View commit details
    Browse the repository at this point in the history

  4. fix efs test

    @bblodfon
    bblodfon committed Aug 1, 2024
    Configuration menu
    Copy the full SHA
    fc5d24d View commit details
    Browse the repository at this point in the history

  5. update and improve test for AV

    @bblodfon
    bblodfon committed Aug 1, 2024
    Configuration menu
    Copy the full SHA
    6df3bbd View commit details
    Browse the repository at this point in the history

  6. add sav test

    @bblodfon
    bblodfon committed Aug 1, 2024
    Configuration menu
    Copy the full SHA
    fc86503 View commit details
    Browse the repository at this point in the history

Commits on Aug 7, 2024

  1. Merge branch 'main' into voting_methods

    @bblodfon
    bblodfon committed Aug 7, 2024
    Configuration menu
    Copy the full SHA
    0d9eccf View commit details
    Browse the repository at this point in the history

  2. add borda score

    @bblodfon
    bblodfon committed Aug 7, 2024
    Configuration menu
    Copy the full SHA
    87d68d4 View commit details
    Browse the repository at this point in the history

  3. update tests

    @bblodfon
    bblodfon committed Aug 7, 2024
    Configuration menu
    Copy the full SHA
    fa05f09 View commit details
    Browse the repository at this point in the history

Commits on Aug 12, 2024

  1. add seq and revseq PAV Rcpp methods

    @bblodfon
    bblodfon committed Aug 12, 2024
    Configuration menu
    Copy the full SHA
    6a89966 View commit details
    Browse the repository at this point in the history

  2. add R functions for the PAV methods

    @bblodfon
    bblodfon committed Aug 12, 2024
    Configuration menu
    Copy the full SHA
    5c09975 View commit details
    Browse the repository at this point in the history

  3. comment printing

    @bblodfon
    bblodfon committed Aug 12, 2024
    Configuration menu
    Copy the full SHA
    103bf45 View commit details
    Browse the repository at this point in the history

  4. add tests for PAV methods

    @bblodfon
    bblodfon committed Aug 12, 2024
    Configuration menu
    Copy the full SHA
    ff17d11 View commit details
    Browse the repository at this point in the history

  5. add PAV methods to efs

    @bblodfon
    bblodfon committed Aug 12, 2024
    Configuration menu
    Copy the full SHA
    b6f4b5e View commit details
    Browse the repository at this point in the history

Commits on Aug 13, 2024

  1. refactor: do not use C++ RNGs

    @bblodfon
    bblodfon committed Aug 13, 2024
    Configuration menu
    Copy the full SHA
    3a248cf View commit details
    Browse the repository at this point in the history

  2. fix startsWith

    @bblodfon
    bblodfon committed Aug 13, 2024
    Configuration menu
    Copy the full SHA
    92ce0df View commit details
    Browse the repository at this point in the history

  3. updocs

    @bblodfon
    bblodfon committed Aug 13, 2024
    Configuration menu
    Copy the full SHA
    283003e View commit details
    Browse the repository at this point in the history

  4. fix data.table note

    @bblodfon
    bblodfon committed Aug 13, 2024
    Configuration menu
    Copy the full SHA
    567f456 View commit details
    Browse the repository at this point in the history

Commits on Aug 19, 2024

  1. add committee_size parameter, refactor borda score

    @bblodfon
    bblodfon committed Aug 19, 2024
    Configuration menu
    Copy the full SHA
    e55ae24 View commit details
    Browse the repository at this point in the history

  2. add large data test for seq pav

    @bblodfon
    bblodfon committed Aug 19, 2024
    Configuration menu
    Copy the full SHA
    9a37e60 View commit details
    Browse the repository at this point in the history

Commits on Aug 21, 2024

  1. refactor C++ code, add optimized PAV

    @bblodfon
    bblodfon committed Aug 21, 2024
    Configuration menu
    Copy the full SHA
    58ab928 View commit details
    Browse the repository at this point in the history

  2. remove revseq-PAV method, use optimized seqPAV

    @bblodfon
    bblodfon committed Aug 21, 2024
    Configuration menu
    Copy the full SHA
    61c0907 View commit details
    Browse the repository at this point in the history

  3. update tests

    @bblodfon
    bblodfon committed Aug 21, 2024
    Configuration menu
    Copy the full SHA
    8654a38 View commit details
    Browse the repository at this point in the history

Commits on Aug 23, 2024

  1. remove suboptimal seqPAV function

    @bblodfon
    bblodfon committed Aug 23, 2024
    Configuration menu
    Copy the full SHA
    47e3dcf View commit details
    Browse the repository at this point in the history

  2. shuffle candidates outside Rcpp functions (same tie-breaking)

    @bblodfon
    bblodfon committed Aug 23, 2024
    Configuration menu
    Copy the full SHA
    b369c6e View commit details
    Browse the repository at this point in the history

  3. optimize Phragmen a bit => do not randomly select the candidate with … 

    …min load
    @bblodfon
    bblodfon committed Aug 23, 2024
    Configuration menu
    Copy the full SHA
    6b7fb03 View commit details
    Browse the repository at this point in the history

  4. add phragmen's rule in efs

    @bblodfon
    bblodfon committed Aug 23, 2024
    Configuration menu
    Copy the full SHA
    60065f9 View commit details
    Browse the repository at this point in the history

  5. correct borda score + use phragmens rule

    @bblodfon
    bblodfon committed Aug 23, 2024
    Configuration menu
    Copy the full SHA
    8ffa44f View commit details
    Browse the repository at this point in the history

  6. add tests for Phragmen's rule

    @bblodfon
    bblodfon committed Aug 23, 2024
    Configuration menu
    Copy the full SHA
    852ff35 View commit details
    Browse the repository at this point in the history

Commits on Sep 18, 2024

  1. correct weighted Phragmen's rule

    @bblodfon
    bblodfon committed Sep 18, 2024
    Configuration menu
    Copy the full SHA
    5623812 View commit details
    Browse the repository at this point in the history

  2. add specific test for phragmen's rule

    @bblodfon
    bblodfon committed Sep 18, 2024
    Configuration menu
    Copy the full SHA
    7e3be3e View commit details
    Browse the repository at this point in the history

Commits on Sep 19, 2024

  1. Merge branch 'main' into voting_methods

    @bblodfon
    bblodfon authored Sep 19, 2024
    Configuration menu
    Copy the full SHA
    25387c4 View commit details
    Browse the repository at this point in the history

  2. run document()

    @bblodfon
    bblodfon committed Sep 19, 2024
    Configuration menu
    Copy the full SHA
    1eef6c6 View commit details
    Browse the repository at this point in the history

Commits on Oct 17, 2024

  1. show data.table result after using ':='

    @bblodfon
    bblodfon committed Oct 17, 2024
    Configuration menu
    Copy the full SHA
    f2ccbda View commit details
    Browse the repository at this point in the history

  2. add n_resamples field + nicer obj print

    @bblodfon
    bblodfon committed Oct 17, 2024
    Configuration menu
    Copy the full SHA
    bea5e39 View commit details
    Browse the repository at this point in the history

Commits on Oct 24, 2024

  1. cover edge case (eg lasso resulted in no features getting selected)

    @bblodfon
    bblodfon committed Oct 24, 2024
    Configuration menu
    Copy the full SHA
    2d21fc7 View commit details
    Browse the repository at this point in the history

Commits on Oct 25, 2024

  1. Merge branch 'main' into voting_methods

    @bblodfon
    bblodfon committed Oct 25, 2024
    Configuration menu
    Copy the full SHA
    ad9fd2e View commit details
    Browse the repository at this point in the history

  2. updocs

    @bblodfon
    bblodfon committed Oct 25, 2024
    Configuration menu
    Copy the full SHA
    7f3ab3b View commit details
    Browse the repository at this point in the history

  3. small styling fix

    @bblodfon
    bblodfon committed Oct 25, 2024
    Configuration menu
    Copy the full SHA
    4137404 View commit details
    Browse the repository at this point in the history

Commits on Oct 31, 2024

  1. add Stabl ref

    @bblodfon
    bblodfon committed Oct 31, 2024
    Configuration menu
    Copy the full SHA
    d151303 View commit details
    Browse the repository at this point in the history

  2. more descriptive name

    @bblodfon
    bblodfon committed Oct 31, 2024
    Configuration menu
    Copy the full SHA
    83529b6 View commit details
    Browse the repository at this point in the history

  3. add embedded ensemble feature selection

    @bblodfon
    bblodfon committed Oct 31, 2024
    Configuration menu
    Copy the full SHA
    49bb097 View commit details
    Browse the repository at this point in the history

Commits on Nov 1, 2024

  1. remove print()

    @bblodfon
    bblodfon committed Nov 1, 2024
    Configuration menu
    Copy the full SHA
    6f3923f View commit details
    Browse the repository at this point in the history

Commits on Nov 5, 2024

  1. add TOCHECK comment on benchmark design

    @bblodfon
    bblodfon committed Nov 5, 2024
    Configuration menu
    Copy the full SHA
    123624e View commit details
    Browse the repository at this point in the history

Commits on Nov 11, 2024

  1. use internal valid task

    @be-marc
    be-marc committed Nov 11, 2024
    Configuration menu
    Copy the full SHA
    0581cdc View commit details
    Browse the repository at this point in the history

  2. simplify

    @be-marc
    be-marc committed Nov 11, 2024
    Configuration menu
    Copy the full SHA
    14acd73 View commit details
    Browse the repository at this point in the history

  3. ...

    @be-marc
    be-marc committed Nov 11, 2024
    Configuration menu
    Copy the full SHA
    81b475d View commit details
    Browse the repository at this point in the history

  4. store_models = FALSE

    @be-marc
    be-marc committed Nov 11, 2024
    Configuration menu
    Copy the full SHA
    79747ad View commit details
    Browse the repository at this point in the history

  5. ...

    @be-marc
    be-marc committed Nov 11, 2024
    Configuration menu
    Copy the full SHA
    331f231 View commit details
    Browse the repository at this point in the history

Commits on Nov 18, 2024

  1. separate the use of inner_measure and measure used in the test sets

    @bblodfon
    bblodfon committed Nov 18, 2024
    Configuration menu
    Copy the full SHA
    081acc8 View commit details
    Browse the repository at this point in the history

  2. updocs

    @bblodfon
    bblodfon committed Nov 18, 2024
    Configuration menu
    Copy the full SHA
    efc0155 View commit details
    Browse the repository at this point in the history

  3. update tests

    @bblodfon
    bblodfon committed Nov 18, 2024
    Configuration menu
    Copy the full SHA
    0e2f93f View commit details
    Browse the repository at this point in the history

  4. Merge branch 'main' into voting_methods

    @bblodfon
    bblodfon committed Nov 18, 2024
    Configuration menu
    Copy the full SHA
    3bca203 View commit details
    Browse the repository at this point in the history

  5. refactor: expect_vector => expect_numeric

    @bblodfon
    bblodfon committed Nov 18, 2024
    Configuration menu
    Copy the full SHA
    d457221 View commit details
    Browse the repository at this point in the history

  6. fix partial arg match

    @bblodfon
    bblodfon committed Nov 18, 2024
    Configuration menu
    Copy the full SHA
    9cb56b1 View commit details
    Browse the repository at this point in the history

  7. fix example

    @bblodfon
    bblodfon committed Nov 18, 2024
    Configuration menu
    Copy the full SHA
    cc36179 View commit details
    Browse the repository at this point in the history

Commits on Nov 23, 2024

  1. use fastVoteR for feature ranking

    @bblodfon
    bblodfon committed Nov 23, 2024
    Configuration menu
    Copy the full SHA
    816376a View commit details
    Browse the repository at this point in the history

Commits on Nov 25, 2024

  1. pass named list to callback parameter

    @be-marc
    be-marc committed Nov 25, 2024
    Configuration menu
    Copy the full SHA
    3dae249 View commit details
    Browse the repository at this point in the history

  2. skip test if fastVoteR is not available

    @bblodfon
    bblodfon committed Nov 25, 2024
    Configuration menu
    Copy the full SHA
    fd5afbc View commit details
    Browse the repository at this point in the history

Commits on Nov 26, 2024

  1. refactor: better handling of inner measure

    @bblodfon
    bblodfon committed Nov 26, 2024
    Configuration menu
    Copy the full SHA
    c937024 View commit details
    Browse the repository at this point in the history

  2. add tests for embedded_ensemble_fselect()

    @bblodfon
    bblodfon committed Nov 26, 2024
    Configuration menu
    Copy the full SHA
    8e506c8 View commit details
    Browse the repository at this point in the history

  3. update NEWs

    @bblodfon
    bblodfon committed Nov 26, 2024
    Configuration menu
    Copy the full SHA
    3bd1772 View commit details
    Browse the repository at this point in the history

  4. add active_measure field

    @bblodfon
    bblodfon committed Nov 26, 2024
    Configuration menu
    Copy the full SHA
    9e05dca View commit details
    Browse the repository at this point in the history

Commits on Nov 27, 2024

  1. remove Remotes as fastVoteR is now on CRAN :)

    @bblodfon
    bblodfon committed Nov 27, 2024
    Configuration menu
    Copy the full SHA
    832bd7f View commit details
    Browse the repository at this point in the history

Commits on Nov 29, 2024

  1. refine doc

    @bblodfon
    bblodfon committed Nov 29, 2024
    Configuration menu
    Copy the full SHA
    8c0d73f View commit details
    Browse the repository at this point in the history