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Merge pull request #1472 from milaboratory/zero-min-bin-width
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Zero min bin width
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@dbolotin
dbolotin authored Dec 8, 2023
2 parents fa56322 + 65240cf commit fcad38b
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Showing 11 changed files with 188 additions and 187 deletions.
4 changes: 2 additions & 2 deletions build.gradle.kts
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Original file line number Diff line number Diff line change
Expand Up @@ -134,13 +134,13 @@ val toObfuscate: Configuration by configurations.creating {
val obfuscationLibs: Configuration by configurations.creating


val mixcrAlgoVersion = "4.5.0-129-fix-npe"
val mixcrAlgoVersion = "4.5.0-130-develop"
// may be blank (will be inherited from mixcr-algo)
val milibVersion = ""
// may be blank (will be inherited from mixcr-algo or milib)
val miuVersion = ""
// may be blank (will be inherited from mixcr-algo)
val mitoolVersion = ""
val mitoolVersion = "2.1.0-6-main"
// may be blank (will be inherited from mixcr-algo)
val repseqioVersion = ""

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4 changes: 2 additions & 2 deletions regression/presets/analyze/10x-sc-xcr-vdj.yaml
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Expand Up @@ -263,8 +263,8 @@ refineTagsAndSort:
minSequenceCount: 4
reportHist:
log: false
binNumber: 40
minBinWidth: 0.0
binNumber: 0
minBinWidth: 6.0
multiplyWeightByKey: false
operator:
type: group_operator_range
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4 changes: 2 additions & 2 deletions regression/presets/analyze/10x-vdj-bcr-full-length.yaml
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Expand Up @@ -263,8 +263,8 @@ refineTagsAndSort:
minSequenceCount: 4
reportHist:
log: false
binNumber: 40
minBinWidth: 0.0
binNumber: 0
minBinWidth: 6.0
multiplyWeightByKey: false
operator:
type: group_operator_range
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4 changes: 2 additions & 2 deletions regression/presets/analyze/10x-vdj-bcr.yaml
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Original file line number Diff line number Diff line change
Expand Up @@ -263,8 +263,8 @@ refineTagsAndSort:
minSequenceCount: 4
reportHist:
log: false
binNumber: 40
minBinWidth: 0.0
binNumber: 0
minBinWidth: 6.0
multiplyWeightByKey: false
operator:
type: group_operator_range
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4 changes: 2 additions & 2 deletions regression/presets/analyze/10x-vdj-tcr-alias-multi-barcode-test.yaml
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Expand Up @@ -263,8 +263,8 @@ refineTagsAndSort:
minSequenceCount: 4
reportHist:
log: false
binNumber: 40
minBinWidth: 0.0
binNumber: 0
minBinWidth: 6.0
multiplyWeightByKey: false
operator:
type: group_operator_range
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4 changes: 2 additions & 2 deletions regression/presets/analyze/10x-vdj-tcr-full-length.yaml
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Original file line number Diff line number Diff line change
Expand Up @@ -263,8 +263,8 @@ refineTagsAndSort:
minSequenceCount: 4
reportHist:
log: false
binNumber: 40
minBinWidth: 0.0
binNumber: 0
minBinWidth: 6.0
multiplyWeightByKey: false
operator:
type: group_operator_range
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4 changes: 2 additions & 2 deletions regression/presets/analyze/10x-vdj-tcr-qc-test.yaml
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Expand Up @@ -265,8 +265,8 @@ refineTagsAndSort:
minSequenceCount: 4
reportHist:
log: false
binNumber: 40
minBinWidth: 0.0
binNumber: 0
minBinWidth: 6.0
multiplyWeightByKey: false
operator:
type: group_operator_range
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4 changes: 2 additions & 2 deletions regression/presets/analyze/10x-vdj-tcr.yaml
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Original file line number Diff line number Diff line change
Expand Up @@ -263,8 +263,8 @@ refineTagsAndSort:
minSequenceCount: 4
reportHist:
log: false
binNumber: 40
minBinWidth: 0.0
binNumber: 0
minBinWidth: 6.0
multiplyWeightByKey: false
operator:
type: group_operator_range
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170 changes: 85 additions & 85 deletions regression/reports/baseSingleCell.raw.yaml
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Expand Up @@ -480,127 +480,127 @@ refineTagsAndSort:
metricHists:
- bins:
- from: 56.0
to: 61.925
to: 62.0
weight: 25.0
- from: 61.925
to: 67.85
- from: 62.0
to: 68.0
weight: 1.0
- from: 67.85
to: 73.775
- from: 68.0
to: 74.0
weight: 1.0
- from: 73.775
to: 79.7
- from: 74.0
to: 80.0
weight: 0.0
- from: 79.7
to: 85.625
- from: 80.0
to: 86.0
weight: 0.0
- from: 85.625
to: 91.55
- from: 86.0
to: 92.0
weight: 0.0
- from: 91.55
to: 97.475
- from: 92.0
to: 98.0
weight: 0.0
- from: 97.475
to: 103.4
- from: 98.0
to: 104.0
weight: 0.0
- from: 103.4
to: 109.32499999999999
- from: 104.0
to: 110.0
weight: 0.0
- from: 109.32499999999999
to: 115.25
- from: 110.0
to: 116.0
weight: 0.0
- from: 115.25
to: 121.175
- from: 116.0
to: 122.0
weight: 0.0
- from: 121.175
to: 127.1
- from: 122.0
to: 128.0
weight: 0.0
- from: 127.1
to: 133.02499999999998
- from: 128.0
to: 134.0
weight: 0.0
- from: 133.02499999999998
to: 138.95
- from: 134.0
to: 140.0
weight: 0.0
- from: 138.95
to: 144.875
- from: 140.0
to: 146.0
weight: 0.0
- from: 144.875
to: 150.8
- from: 146.0
to: 152.0
weight: 0.0
- from: 150.8
to: 156.725
- from: 152.0
to: 158.0
weight: 1.0
- from: 156.725
to: 162.64999999999998
- from: 158.0
to: 164.0
weight: 0.0
- from: 162.64999999999998
to: 168.575
- from: 164.0
to: 170.0
weight: 0.0
- from: 168.575
to: 174.5
- from: 170.0
to: 176.0
weight: 0.0
- from: 174.5
to: 180.425
- from: 176.0
to: 182.0
weight: 1.0
- from: 180.425
to: 186.35
- from: 182.0
to: 188.0
weight: 0.0
- from: 186.35
to: 192.275
- from: 188.0
to: 194.0
weight: 0.0
- from: 192.275
to: 198.2
- from: 194.0
to: 200.0
weight: 0.0
- from: 198.2
to: 204.125
- from: 200.0
to: 206.0
weight: 0.0
- from: 204.125
to: 210.04999999999998
- from: 206.0
to: 212.0
weight: 0.0
- from: 210.04999999999998
to: 215.975
- from: 212.0
to: 218.0
weight: 3.0
- from: 215.975
to: 221.9
weight: 1.0
- from: 221.9
to: 227.825
- from: 218.0
to: 224.0
weight: 2.0
- from: 227.825
to: 233.75
weight: 6.0
- from: 233.75
to: 239.67499999999998
- from: 224.0
to: 230.0
weight: 2.0
- from: 230.0
to: 236.0
weight: 8.0
- from: 236.0
to: 242.0
weight: 10.0
- from: 239.67499999999998
to: 245.6
- from: 242.0
to: 248.0
weight: 8.0
- from: 248.0
to: 254.0
weight: 12.0
- from: 254.0
to: 260.0
weight: 7.0
- from: 245.6
to: 251.525
weight: 10.0
- from: 251.525
to: 257.45
weight: 13.0
- from: 257.45
to: 263.375
- from: 260.0
to: 266.0
weight: 6.0
- from: 263.375
to: 269.29999999999995
- from: 266.0
to: 272.0
weight: 1.0
- from: 269.29999999999995
to: 275.225
- from: 272.0
to: 278.0
weight: 0.0
- from: 275.225
to: 281.15
- from: 278.0
to: 284.0
weight: 0.0
- from: 281.15
to: 287.075
- from: 284.0
to: 290.0
weight: 0.0
- from: 287.075
to: 293.0
- from: 290.0
to: 296.0
weight: 1.0
collectionSpec:
log: false
binNumber: 40
minBinWidth: 0.0
binNumber: 0
minBinWidth: 6.0
multiplyWeightByKey: false
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