Release v3.0.8

CHANGELOG

@@ -1,4 +1,24 @@
 
+MiXCR 3.0.8 (22 Jul 2019)
+========================
+
+-- Alignments are forced to the corresponding edge if the same V/J gene is detected in the opposite 
+   PE read mate
+-- Average quality threshold (`-OaverageQualityThreshold=...`) in `assembleContigs` increased to 
+   `20`
+-- Added `exportAlignmentsForClones` action
+-- All indels in homopolimeric stretches are now shifted left in all alignment algorihtms
+-- Smarter base V/J/C hit selection in `assembleContigs`
+-- Read quality trimming (see help for `--trimming-window-size` and `--trimming-quality-threshold` 
+   options in `align`) (disabled by default until 3.1)
+-- Fix exception in `-mutationsDetailed` and similar export options
+-- Fixes in step skipping logic in `analyze` (additional automatic parameter adjustment for VDJC 
+   libraries covering only `VRegion`)
+-- Several more fixes for `assembleContigs`
+-- minor: Fixes incorrect numbers in `assemble` report
+-- minor: Fix for filterAlignmentsAction
+
+
 MiXCR 3.0.7 (20 May 2019)
 ========================
 

CHANGELOG_CURRENT

@@ -1,11 +0,0 @@
-Alignments are forced to the corresponding edge if the same V/J gene is detected in the opposite PE read mate
-Average quality threshold (`-OaverageQualityThreshold=...`) in `assembleContigs` increased to `20`
-Added `exportAlignmentsForClones` action
-All indels in homopolimeric stretches are now shifted left in all alignment algorihtms
-Smarter base V/J/C hit selection in `assembleContigs`
-Read quality trimming (see help for `--trimming-window-size` and `--trimming-quality-threshold` options in `align`) (disabled by default until 3.1)
-Fix exception in `-mutationsDetailed` and similar export options
-Fixes in step skipping logic in `analyze` (additional automatic parameter adjustment for VDJC libraries covering only `VRegion`)
-Several more fixes for `assembleContigs`
-minor: Fixes incorrect numbers in `assemble` report
-minor: Fix for filterAlignmentsAction

pom.xml

@@ -33,7 +33,7 @@
 
     <groupId>com.milaboratory</groupId>
     <artifactId>mixcr</artifactId>
-    <version>3.0.8-SNAPSHOT</version>
+    <version>3.0.8</version>
     <packaging>jar</packaging>
     <name>MiXCR</name>