Small bug fixes to live

v0.4.4

bump version

Inputtobed: guppy and megalodon deprecation

To extract methylation calls from guppy bam files we use modbampy, which is a tool that was developed by ONT and is currently deprecated. We therefore strongly recommend to use modkit, the new ONT tool.

Megalodon is also deprecated, we recommend moving to guppy/dorado for methylation calling

modkit support

Add suport for modkit, the new ONT tool to extract modification information from basecalled bam files.

hg38 support

Added Hg38 support

Preprint

Preprint release with two available models: general and brainstem.