Bug fix for advance users using the java properties for barcode separators (both sequences and qualities). Usign an special character as separator was not working before, and providing a regexp as introducing it into the barcode separator of output file. This fix corrects the issue and allows to properly use other separators as defaults (e.g., +
) instead of the SAM-spec recommended hyphen (-
).
Recommended to update if you are using the Dreadtools.barcode_index_delimiter
and/or Dreadtools.barcode_quality_delimiter
java properties. Otherwise, the fix does not affect the user.