Biol-project-lab

Only important scripts are included. See shared doc for brief explanation of steps.

Name		Name	Last commit message	Last commit date
Latest commit History 3 Commits
README.md		README.md
Trinity.fasta		Trinity.fasta
Trinity.gene.TPM.not_cross_norm.runTMM.R		Trinity.gene.TPM.not_cross_norm.runTMM.R
Trinity.isoform.TPM.not_cross_norm.runTMM.R		Trinity.isoform.TPM.not_cross_norm.runTMM.R
Trinity.isoform.counts.matrix.4A4_vs_wt.DESeq2.DE_results		Trinity.isoform.counts.matrix.4A4_vs_wt.DESeq2.DE_results
Trinity.isoform.counts.matrix.4A4_vs_wt.DESeq2.DE_results.MA_n_Volcano.pdf		Trinity.isoform.counts.matrix.4A4_vs_wt.DESeq2.DE_results.MA_n_Volcano.pdf
analyzeTrinityDeNovo.sh		analyzeTrinityDeNovo.sh
blastPep.sh		blastPep.sh
diffExpr.P1e-4_C3.matrix.R		diffExpr.P1e-4_C3.matrix.R
diffExpr.P1e-4_C3.matrix.log2.centered.genes_vs_samples_heatmap.pdf		diffExpr.P1e-4_C3.matrix.log2.centered.genes_vs_samples_heatmap.pdf
diffExpr.P1e-4_C3.matrix.log2.centered.sample_cor_matrix.pdf		diffExpr.P1e-4_C3.matrix.log2.centered.sample_cor_matrix.pdf
extractDE.sh		extractDE.sh
predictProteins.sh		predictProteins.sh
quantify.sh		quantify.sh
salmon.sh		salmon.sh
trimAll.sh		trimAll.sh
trinityDeNovo.sh		trinityDeNovo.sh

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