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@lewisfish
lewisfish committed Oct 6, 2023
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2 changes: 1 addition & 1 deletion interface/render.html
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Expand Up @@ -105,7 +105,7 @@ <h1>render
<li id="statements"><i class="fa fa-list-ol"></i>
<a data-toggle="tooltip"
data-placement="bottom" data-html="true"
title="<p> 0.1% of total for procedures.</p>Including implementation: 63 statements, 1.4% of total for procedures.">3 statements</a>
title="<p> 0.1% of total for procedures.</p>Including implementation: 47 statements, 1.0% of total for procedures.">3 statements</a>
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<li id="source-file">
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3 changes: 2 additions & 1 deletion lists/procedures.html
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Expand Up @@ -362,7 +362,8 @@ <h1>Procedures</h1>
<tr><td><a href='../interface/spectral.html'>spectral</a></td><td><a href='../module/opticalproperties.html'>opticalProperties</a></td><td>Interface</td><td></td></tr>
<tr><td><a href='../interface/sphere.html'>sphere</a></td><td><a href='../module/sdfs.html'>sdfs</a></td><td>Interface</td><td></td></tr>
<tr><td><a href='../proc/sphere_init.html'>sphere_init</a></td><td><a href='../module/sdfs.html'>sdfs</a></td><td>Function</td><td><p>Initalising function for Sphere SDF.</p></td></tr>
<tr><td><a href='../proc/subtraction.html'>subtraction</a></td><td><a href='../module/sdfmodifiers.html'>sdfModifiers</a></td><td>Function</td><td><p>Subtraction operator. Takes one SDF from another.</p></td></tr>
<tr><td><a href='../proc/subtraction.html'>subtraction</a></td><td><a href='../module/sdfmodifiers.html'>sdfModifiers</a></td><td>Function</td><td><p>Subtraction operator. Takes one SDF from another.
Take the first SDF from the 2nd SDF</p></td></tr>
<tr><td><a href='../proc/tauint2.html'>tauint2</a></td><td><a href='../module/inttau2.html'>inttau2</a></td><td>Subroutine</td><td><p>optical depth integration subroutine
Moves photons to interaction location
Calculated is any reflection or refraction happens whilst moving</p></td></tr>
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4 changes: 2 additions & 2 deletions module/detectors.html
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Expand Up @@ -213,9 +213,9 @@ <h3 class="panel-title">Uses</h3>
<ul class="list-group">
<li class="list-group-item">
<ul class="list-inline">
<li><a href='../module/vector_class.html'>vector_class</a></li>
<li><a href='../module/detector_mod.html'>detector_mod</a></li>
<li><a href='../module/constants.html'>constants</a></li>
<li><a href='../module/detector_mod.html'>detector_mod</a></li>
<li><a href='../module/vector_class.html'>vector_class</a></li>
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2 changes: 1 addition & 1 deletion module/historystack.html
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Expand Up @@ -236,8 +236,8 @@ <h3 class="panel-title">Uses</h3>
<ul class="list-group">
<li class="list-group-item">
<ul class="list-inline">
<li><a href='../module/vec4_class.html'>vec4_class</a></li>
<li><a href='../module/constants.html'>constants</a></li>
<li><a href='../module/vec4_class.html'>vec4_class</a></li>
</ul>
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</ul>
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2 changes: 1 addition & 1 deletion module/mat_class.html
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Expand Up @@ -212,8 +212,8 @@ <h3 class="panel-title">Uses</h3>
<ul class="list-group">
<li class="list-group-item">
<ul class="list-inline">
<li><a href='../module/vec4_class.html'>vec4_class</a></li>
<li><a href='../module/constants.html'>constants</a></li>
<li><a href='../module/vec4_class.html'>vec4_class</a></li>
</ul>
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</ul>
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2 changes: 1 addition & 1 deletion module/opticalproperties.html
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Expand Up @@ -237,8 +237,8 @@ <h3 class="panel-title">Uses</h3>
<ul class="list-group">
<li class="list-group-item">
<ul class="list-inline">
<li><a href='../module/piecewisemod.html'>piecewiseMod</a></li>
<li><a href='../module/constants.html'>constants</a></li>
<li><a href='../module/piecewisemod.html'>piecewiseMod</a></li>
</ul>
</li>
</ul>
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4 changes: 2 additions & 2 deletions module/parse_mod.html
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Expand Up @@ -105,7 +105,7 @@ <h1>parse_mod
<li id="statements"><i class="fa fa-list-ol"></i>
<a data-toggle="tooltip"
data-placement="bottom" data-html="true"
title="10.2% of total for modules and submodules.">538 statements</a>
title="10.3% of total for modules and submodules.">538 statements</a>
</li>

<li id="source-file">
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<ul class="list-group">
<li class="list-group-item">
<ul class="list-inline">
<li><a href='../module/vector_class.html'>vector_class</a></li>
<li>tomlf</li>
<li><a href='../module/constants.html'>constants</a></li>
<li><a href='../module/vector_class.html'>vector_class</a></li>
</ul>
</li>
</ul>
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4 changes: 2 additions & 2 deletions module/photonmod.html
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Expand Up @@ -261,9 +261,9 @@ <h3 class="panel-title">Uses</h3>
<ul class="list-group">
<li class="list-group-item">
<ul class="list-inline">
<li><a href='../module/vector_class.html'>vector_class</a></li>
<li><a href='../module/random.html'>random</a></li>
<li><a href='../module/constants.html'>constants</a></li>
<li><a href='../module/random.html'>random</a></li>
<li><a href='../module/vector_class.html'>vector_class</a></li>
</ul>
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8 changes: 4 additions & 4 deletions module/sdf_basemod.html
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Expand Up @@ -105,7 +105,7 @@ <h1>sdf_baseMod
<li id="statements"><i class="fa fa-list-ol"></i>
<a data-toggle="tooltip"
data-placement="bottom" data-html="true"
title=" 4.4% of total for modules and submodules.">233 statements</a>
title=" 4.1% of total for modules and submodules.">217 statements</a>
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<li id="source-file">
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<ul class="list-group">
<li class="list-group-item">
<ul class="list-inline">
<li><a href='../module/vector_class.html'>vector_class</a></li>
<li><a href='../module/opticalproperties.html'>opticalProperties</a></li>
<li><a href='../module/constants.html'>constants</a></li>
<li><a href='../module/sdfhelpers.html'>sdfHelpers</a></li>
<li><a href='../module/constants.html'>constants</a></li>
<li><a href='../module/opticalproperties.html'>opticalProperties</a></li>
<li><a href='../module/vector_class.html'>vector_class</a></li>
</ul>
</li>
</ul>
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11 changes: 6 additions & 5 deletions module/sdfmodifiers.html
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Expand Up @@ -105,7 +105,7 @@ <h1>sdfModifiers
<li id="statements"><i class="fa fa-list-ol"></i>
<a data-toggle="tooltip"
data-placement="bottom" data-html="true"
title=" 5.0% of total for modules and submodules.">265 statements</a>
title=" 5.1% of total for modules and submodules.">265 statements</a>
</li>

<li id="source-file">
Expand Down Expand Up @@ -246,10 +246,10 @@ <h3 class="panel-title">Uses</h3>
<ul class="list-group">
<li class="list-group-item">
<ul class="list-inline">
<li><a href='../module/vector_class.html'>vector_class</a></li>
<li><a href='../module/sdf_basemod.html'>sdf_baseMod</a></li>
<li><a href='../module/constants.html'>constants</a></li>
<li><a href='../module/sdfhelpers.html'>sdfHelpers</a></li>
<li><a href='../module/constants.html'>constants</a></li>
<li><a href='../module/sdf_basemod.html'>sdf_baseMod</a></li>
<li><a href='../module/vector_class.html'>vector_class</a></li>
</ul>
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</h3></div>
<div class="panel-body">

<p>Subtraction operator. Takes one SDF from another.</p>
<p>Subtraction operator. Takes one SDF from another.
Take the first SDF from the 2nd SDF</p>

<h4>Arguments</h4>
<table class="table table-striped varlist">
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4 changes: 2 additions & 2 deletions module/sdfs.html
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<ul class="list-group">
<li class="list-group-item">
<ul class="list-inline">
<li><a href='../module/sdfhelpers.html'>sdfHelpers</a></li>
<li><a href='../module/opticalproperties.html'>opticalProperties</a></li>
<li><a href='../module/vector_class.html'>vector_class</a></li>
<li><a href='../module/sdf_basemod.html'>sdf_baseMod</a></li>
<li><a href='../module/sdfhelpers.html'>sdfHelpers</a></li>
<li><a href='../module/constants.html'>constants</a></li>
<li><a href='../module/vector_class.html'>vector_class</a></li>
</ul>
</li>
</ul>
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2 changes: 1 addition & 1 deletion module/vector_class.html
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Expand Up @@ -105,7 +105,7 @@ <h1>vector_class
<li id="statements"><i class="fa fa-list-ol"></i>
<a data-toggle="tooltip"
data-placement="bottom" data-html="true"
title=" 3.8% of total for modules and submodules.">202 statements</a>
title=" 3.9% of total for modules and submodules.">202 statements</a>
</li>

<li id="source-file">
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2 changes: 1 addition & 1 deletion proc/annulus.html
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Expand Up @@ -174,12 +174,12 @@ <h3 class="panel-title">Uses</h3>
<ul class="list-group">
<li class="list-group-item">
<ul class="list-inline">
<li>tomlf</li>
<li>utils</li>
<li><a href='../module/sim_state_mod.html'>sim_state_mod</a></li>
<li><a href='../module/random.html'>random</a></li>
<li><a href='../module/piecewisemod.html'>piecewiseMod</a></li>
<li><a href='../module/constants.html'>constants</a></li>
<li>tomlf</li>
</ul>
</li>
</ul>
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4 changes: 2 additions & 2 deletions proc/aperture.html
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Expand Up @@ -174,11 +174,11 @@ <h3 class="panel-title">Uses</h3>
<ul class="list-group">
<li class="list-group-item">
<ul class="list-inline">
<li>tomlf</li>
<li><a href='../module/sim_state_mod.html'>sim_state_mod</a></li>
<li><a href='../module/random.html'>random</a></li>
<li><a href='../module/piecewisemod.html'>piecewiseMod</a></li>
<li><a href='../module/random.html'>random</a></li>
<li><a href='../module/constants.html'>constants</a></li>
<li>tomlf</li>
</ul>
</li>
</ul>
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10 changes: 5 additions & 5 deletions proc/circular.html
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Expand Up @@ -174,14 +174,14 @@ <h3 class="panel-title">Uses</h3>
<ul class="list-group">
<li class="list-group-item">
<ul class="list-inline">
<li><a href='../module/sdfhelpers.html'>sdfHelpers</a></li>
<li><a href='../module/random.html'>random</a></li>
<li><a href='../module/mat_class.html'>mat_class</a></li>
<li>tomlf</li>
<li><a href='../module/sim_state_mod.html'>sim_state_mod</a></li>
<li><a href='../module/random.html'>random</a></li>
<li><a href='../module/sdfhelpers.html'>sdfHelpers</a></li>
<li><a href='../module/piecewisemod.html'>piecewiseMod</a></li>
<li><a href='../module/mat_class.html'>mat_class</a></li>
<li><a href='../module/vector_class.html'>vector_class</a></li>
<li><a href='../module/constants.html'>constants</a></li>
<li>tomlf</li>
<li><a href='../module/vector_class.html'>vector_class</a></li>
</ul>
</li>
</ul>
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2 changes: 1 addition & 1 deletion proc/display_settings.html
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Expand Up @@ -175,8 +175,8 @@ <h3 class="panel-title">Uses</h3>
<li class="list-group-item">
<ul class="list-inline">
<li><a href='../module/photonmod.html'>photonMod</a></li>
<li><a href='../module/sim_state_mod.html'>sim_state_mod</a></li>
<li>utils</li>
<li><a href='../module/sim_state_mod.html'>sim_state_mod</a></li>
</ul>
</li>
</ul>
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4 changes: 2 additions & 2 deletions proc/dslit.html
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<ul class="list-group">
<li class="list-group-item">
<ul class="list-inline">
<li>tomlf</li>
<li><a href='../module/sim_state_mod.html'>sim_state_mod</a></li>
<li><a href='../module/random.html'>random</a></li>
<li><a href='../module/piecewisemod.html'>piecewiseMod</a></li>
<li><a href='../module/random.html'>random</a></li>
<li><a href='../module/constants.html'>constants</a></li>
<li>tomlf</li>
</ul>
</li>
</ul>
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12 changes: 6 additions & 6 deletions proc/finalise.html
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Expand Up @@ -174,15 +174,15 @@ <h3 class="panel-title">Uses</h3>
<ul class="list-group">
<li class="list-group-item">
<ul class="list-inline">
<li><a href='../module/sim_state_mod.html'>sim_state_mod</a></li>
<li>utils</li>
<li><a href='../module/iarray.html'>iarray</a></li>
<li><a href='../module/writer_mod.html'>writer_mod</a></li>
<li><a href='../module/detectors.html'>detectors</a></li>
<li><a href='../module/setupmod.html'>setupMod</a></li>
<li>tomlf</li>
<li><a href='../module/constants.html'>constants</a></li>
<li>utils</li>
<li><a href='../module/historystack.html'>historyStack</a></li>
<li><a href='../module/sim_state_mod.html'>sim_state_mod</a></li>
<li><a href='../module/setupmod.html'>setupMod</a></li>
<li><a href='../module/iarray.html'>iarray</a></li>
<li><a href='../module/constants.html'>constants</a></li>
<li><a href='../module/detectors.html'>detectors</a></li>
</ul>
</li>
</ul>
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4 changes: 2 additions & 2 deletions proc/focus.html
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<ul class="list-group">
<li class="list-group-item">
<ul class="list-inline">
<li>tomlf</li>
<li>utils</li>
<li><a href='../module/sim_state_mod.html'>sim_state_mod</a></li>
<li><a href='../module/random.html'>random</a></li>
<li>utils</li>
<li><a href='../module/piecewisemod.html'>piecewiseMod</a></li>
<li><a href='../module/vector_class.html'>vector_class</a></li>
<li>tomlf</li>
</ul>
</li>
</ul>
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4 changes: 2 additions & 2 deletions proc/get_vessels.html
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<ul class="list-group">
<li class="list-group-item">
<ul class="list-inline">
<li><a href='../module/vector_class.html'>vector_class</a></li>
<li><a href='../module/opticalproperties.html'>opticalProperties</a></li>
<li><a href='../module/sdfs.html'>sdfs</a></li>
<li><a href='../module/opticalproperties.html'>opticalProperties</a></li>
<li><a href='../module/vector_class.html'>vector_class</a></li>
</ul>
</li>
</ul>
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2 changes: 1 addition & 1 deletion proc/handle_annulus_dect.html
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<ul class="list-group">
<li class="list-group-item">
<ul class="list-inline">
<li><a href='../module/sim_state_mod.html'>sim_state_mod</a></li>
<li><a href='../module/detectors.html'>detectors</a></li>
<li><a href='../module/sim_state_mod.html'>sim_state_mod</a></li>
</ul>
</li>
</ul>
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2 changes: 1 addition & 1 deletion proc/handle_camera.html
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<ul class="list-group">
<li class="list-group-item">
<ul class="list-inline">
<li><a href='../module/sim_state_mod.html'>sim_state_mod</a></li>
<li><a href='../module/detectors.html'>detectors</a></li>
<li><a href='../module/sim_state_mod.html'>sim_state_mod</a></li>
</ul>
</li>
</ul>
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2 changes: 1 addition & 1 deletion proc/handle_circle_dect.html
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<ul class="list-group">
<li class="list-group-item">
<ul class="list-inline">
<li><a href='../module/sim_state_mod.html'>sim_state_mod</a></li>
<li><a href='../module/detectors.html'>detectors</a></li>
<li><a href='../module/sim_state_mod.html'>sim_state_mod</a></li>
</ul>
</li>
</ul>
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2 changes: 1 addition & 1 deletion proc/histfinish_sub.html
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<ul class="list-group">
<li class="list-group-item">
<ul class="list-inline">
<li>utils</li>
<li><a href='../module/constants.html'>constants</a></li>
<li>utils</li>
</ul>
</li>
</ul>
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2 changes: 1 addition & 1 deletion proc/json_writer.html
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<ul class="list-group">
<li class="list-group-item">
<ul class="list-inline">
<li>utils</li>
<li><a href='../module/constants.html'>constants</a></li>
<li>utils</li>
</ul>
</li>
</ul>
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2 changes: 1 addition & 1 deletion proc/normalise_fluence.html
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<ul class="list-group">
<li class="list-group-item">
<ul class="list-inline">
<li><a href='../module/constants.html'>constants</a></li>
<li><a href='../module/gridmod.html'>gridMod</a></li>
<li><a href='../module/constants.html'>constants</a></li>
</ul>
</li>
</ul>
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4 changes: 2 additions & 2 deletions proc/obj_writer.html
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<ul class="list-group">
<li class="list-group-item">
<ul class="list-inline">
<li><a href='<a href="https://www.openmp.org/spec-html/5.1/openmpch3.html#x156-1890003">omp_lib</a>'>omp_lib</a></li>
<li>utils</li>
<li><a href='../module/constants.html'>constants</a></li>
<li>utils</li>
<li><a href='<a href="https://www.openmp.org/spec-html/5.1/openmpch3.html#x156-1890003">omp_lib</a>'>omp_lib</a></li>
</ul>
</li>
</ul>
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2 changes: 1 addition & 1 deletion proc/parse_detectors.html
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<ul class="list-group">
<li class="list-group-item">
<ul class="list-inline">
<li><a href='../module/sim_state_mod.html'>sim_state_mod</a></li>
<li><a href='../module/detectors.html'>detectors</a></li>
<li><a href='../module/sim_state_mod.html'>sim_state_mod</a></li>
</ul>
</li>
</ul>
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4 changes: 2 additions & 2 deletions proc/parse_params.html
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<ul class="list-group">
<li class="list-group-item">
<ul class="list-inline">
<li><a href='../module/photonmod.html'>photonMod</a></li>
<li><a href='../module/detectors.html'>detectors</a></li>
<li><a href='../module/piecewisemod.html'>piecewiseMod</a></li>
<li><a href='../module/detectors.html'>detectors</a></li>
<li><a href='../module/photonmod.html'>photonMod</a></li>
</ul>
</li>
</ul>
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2 changes: 1 addition & 1 deletion proc/parse_source.html
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<ul class="list-group">
<li class="list-group-item">
<ul class="list-inline">
<li><a href='../module/piecewisemod.html'>piecewiseMod</a></li>
<li><a href='../module/photonmod.html'>photonMod</a></li>
<li><a href='../module/sim_state_mod.html'>sim_state_mod</a></li>
<li><a href='../module/piecewisemod.html'>piecewiseMod</a></li>
</ul>
</li>
</ul>
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