Update neural network weights

labstructbioinf · Nov 30, 2020 · 2d9caf5 · 2d9caf5
1 parent 7a2fe9a
commit 2d9caf5
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Showing 10 changed files with 6 additions and 3 deletions.
diff --git a/.github/workflows/main.yml b/.github/workflows/main.yml
@@ -19,7 +19,7 @@ jobs:
         pip install -r requirements.txt
     - name: Set environment
       run: |
-        echo "::set-env name=PYTHONPATH::/home/runner/work/DeepCoil/DeepCoil"
+              echo "PYTHONPATH=/home/runner/work/DeepCoil/DeepCoil" >> $GITHUB_ENV
     - name: Test with pytest
       run: |
         pytest -v
diff --git a/CHANGELOG.md b/CHANGELOG.md
@@ -1,5 +1,8 @@
 ## Changelog
 
+### v2.0.1
+- Updated DC2 neural network weights.
+
 ### v2.0
 - Retrained with the updated dataset based on *[SamCC-Turbo](https://github.com/labstructbioinf/samcc_turbo)* labels.
 - Faster inference time by applying *[SeqVec](https://github.com/rostlab/SeqVec)* embeddings instead of *psiblast* profiles.

diff --git a/deepcoil/models/seq.json b/deepcoil/models/seq.json
diff --git a/deepcoil/weights/seq_1.h5 b/deepcoil/weights/seq_1.h5
diff --git a/deepcoil/weights/seq_2.h5 b/deepcoil/weights/seq_2.h5
diff --git a/deepcoil/weights/seq_3.h5 b/deepcoil/weights/seq_3.h5
diff --git a/deepcoil/weights/seq_4.h5 b/deepcoil/weights/seq_4.h5
diff --git a/deepcoil/weights/seq_5.h5 b/deepcoil/weights/seq_5.h5
diff --git a/setup.py b/setup.py
@@ -3,7 +3,7 @@
 with open("README.md", "r") as fh:
     long_description = fh.read()
 
-VERSION = '2.0'
+VERSION = '2.0.1'
 with open('requirements.txt') as f:
       install_reqs = f.read().splitlines()
 

diff --git a/tests/data/test_seq_ref.hdf5 b/tests/data/test_seq_ref.hdf5