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@ksumngs

KSU Molecular NGS Lab

The Molecular Next-Generation Sequencing lab at the Kansas State University College of Veterinary Medicine

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  1. v-met v-met Public

    A bare-bones, ridiculously simple metagenomics pipeline for viruses using Kraken 2 written in Nextflow.

    Nextflow 3 2

  2. yavsap yavsap Public

    Yet Another Viral Subspecies Analysis Pipeline

    Nextflow 2 1

  3. itasserrun itasserrun Public

    Efficiently reformat protein sequences and simulate their structures using I-TASSER

    Shell 1

  4. kraken2 kraken2 Public

    Forked from DerrickWood/kraken2

    The second version of the Kraken taxonomic sequence classification system

    C++

  5. HapLink.jl HapLink.jl Public

    Viral haplotype calling by linkage disequilibrium

    Julia 1

  6. bam-readcount bam-readcount Public

    Forked from genome/bam-readcount

    count DNA sequence reads in BAM files

    CMake

Repositories

Showing 9 of 9 repositories
  • yavsap Public

    Yet Another Viral Subspecies Analysis Pipeline

    ksumngs/yavsap’s past year of commit activity
    Nextflow 2 MIT 1 3 1 Updated Nov 25, 2024
  • v-met Public

    A bare-bones, ridiculously simple metagenomics pipeline for viruses using Kraken 2 written in Nextflow.

    ksumngs/v-met’s past year of commit activity
    Nextflow 3 MIT 2 1 1 Updated Jan 15, 2024
  • HapLink.jl Public

    Viral haplotype calling by linkage disequilibrium

    ksumngs/HapLink.jl’s past year of commit activity
    Julia 0 MIT 1 1 5 Updated Dec 22, 2023
  • kraken2 Public Forked from DerrickWood/kraken2

    The second version of the Kraken taxonomic sequence classification system

    ksumngs/kraken2’s past year of commit activity
    C++ 0 MIT 275 0 0 Updated Jul 11, 2023
  • nf-modules Public

    nf-core-compatible Nextflow modules with a Wildcat flavor

    ksumngs/nf-modules’s past year of commit activity
    Nextflow 0 MIT 0 0 0 Updated May 13, 2023
  • nf-test-datasets Public

    Toy datasets for testing our own Nextflow pipelines in the spirit of nf-core

    ksumngs/nf-test-datasets’s past year of commit activity
    0 0 0 0 Updated Mar 2, 2022
  • bam-readcount Public Forked from genome/bam-readcount

    count DNA sequence reads in BAM files

    ksumngs/bam-readcount’s past year of commit activity
    CMake 0 MIT 95 0 0 Updated Jan 12, 2022
  • itasserrun Public

    Efficiently reformat protein sequences and simulate their structures using I-TASSER

    ksumngs/itasserrun’s past year of commit activity
    Shell 1 MIT 0 0 0 Updated Oct 20, 2021
  • nanofilt Public Forked from wdecoster/nanofilt

    Filtering and trimming of long read sequencing data

    ksumngs/nanofilt’s past year of commit activity
    Python 0 GPL-3.0 14 0 0 Updated Feb 24, 2021

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