Clockwork

Pipelines for processing bacterial sequence data (Illumina only) and variant calling

Note: these pipelines were developed for the CRyPTIC project which studies M. tuberculosis, but in principle can be used on any bacteria.

Please see the clockwork wiki page for documentation.

Name		Name	Last commit message	Last commit date
Latest commit History 243 Commits
db_schema_patches		db_schema_patches
nextflow		nextflow
python		python
scripts		scripts
singularity		singularity
vagrant		vagrant
LICENSE		LICENSE
README.md		README.md