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bumped version to v0.7.8
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jr-leary7 committed Nov 17, 2023
1 parent 2f03b64 commit 9e7ed17
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4 changes: 2 additions & 2 deletions DESCRIPTION
Original file line number Diff line number Diff line change
@@ -1,7 +1,7 @@
Package: scLANE
Type: Package
Title: Model gene expression dynamics with spline-based NB GLMs, GEEs, & GLMMs
Version: 0.7.7
Version: 0.7.8
Authors@R: c(person(given = "Jack", family = "Leary", email = "j.leary@ufl.edu", role = c("aut", "cre"), comment = c(ORCID = "0009-0004-8821-3269")),
person(given = "Rhonda", family = "Bacher", email = "rbacher@ufl.edu", role = c("ctb", "fnd"), comment = c(ORCID = "0000-0001-5787-476X")))
Description: This package uses truncated power basis spline models to build flexible, interpretable models of single cell gene expression over pseudotime or latent time.
Expand All @@ -24,6 +24,7 @@ Imports:
purrr,
tidyr,
furrr,
doSNOW,
gamlss,
scales,
future,
Expand All @@ -35,7 +36,6 @@ Imports:
parallel,
bigstatsr,
RcppEigen,
doParallel,
tidyselect,
broom.mixed,
Rcpp (>= 1.0.7)
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7 changes: 3 additions & 4 deletions NAMESPACE
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Expand Up @@ -11,20 +11,17 @@ export(getFittedValues)
export(getKnotDist)
export(getResultsDE)
export(marge2)
export(modelLRT)
export(nbGAM)
export(npConvolve)
export(plotClusteredGenes)
export(plotModelCoefs)
export(plotModels)
export(smoothedCountsMatrix)
export(sortGenesHeatmap)
export(stripGLM)
export(summarizeModel)
export(testDynamic)
export(testSlope)
export(theme_scLANE)
export(waldTestGEE)
import(RcppEigen)
import(glm2)
import(magrittr)
Expand All @@ -38,7 +35,7 @@ importFrom(Matrix,t)
importFrom(Rcpp,sourceCpp)
importFrom(bigstatsr,as_FBM)
importFrom(broom.mixed,tidy)
importFrom(doParallel,registerDoParallel)
importFrom(doSNOW,registerDoSNOW)
importFrom(dplyr,across)
importFrom(dplyr,arrange)
importFrom(dplyr,bind_cols)
Expand Down Expand Up @@ -134,6 +131,8 @@ importFrom(stats,setNames)
importFrom(stats,vcov)
importFrom(tidyr,pivot_longer)
importFrom(tidyselect,everything)
importFrom(utils,setTxtProgressBar)
importFrom(utils,tail)
importFrom(utils,txtProgressBar)
importFrom(withr,with_output_sink)
useDynLib(scLANE, .registration = TRUE)

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