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@ar0ch ar0ch released this 01 Feb 17:52
· 10 commits to master since this release
0.5.2
5be2bec

Fix for Issue #40, I missed escaping the "*" in the re.sub statement on line 790 while refactoring code .

python2 --version;python2 ./stringMLST.py --predict -d tests/fastqs -P neisseria/nmb --coverage --config neisseria/nmb_config.txt; python3 --version; python3 ./stringMLST.py --predict -d tests/fastqs -P neisseria/nmb --coverage --config neisseria/nmb_config.txt

Python 2.7.11
Sample  abcZ    adk     aroE    fumC    gdh     pdhC    pgm  ST
ERR027250       581 (100.00)    408 (99.35)     655 (91.63)  602 (92.47)        633 (99.60)     612 (100.00)    632 (97.33)     10252
ERR026529       231 (100.00)    180 (100.00)    306 (100.00) 612 (100.00)       269 (100.00)    277 (100.00)    260 (99.78)     10174
ERR036104       2 (100.00)      3 (100.00)      4 (100.00)   3 (100.00) 8 (100.00)      4 (100.00)      6 (100.00)      11

Python 3.6.3 :: Anaconda custom (64-bit)
Sample  abcZ    adk     aroE    fumC    gdh     pdhC    pgm  ST
ERR026529       231 (100.00)    180 (100.00)    306 (100.00) 612 (100.00)       269 (100.00)    277 (100.00)    260 (99.78)     10174
ERR027250       581 (100.00)    408 (99.35)     655 (91.63)  602 (92.47)        633 (99.60)     612 (100.00)    632 (97.33)     10252
ERR036104       2 (100.00)      3 (100.00)      4 (100.00)   3 (100.00) 8 (100.00)      4 (100.00)      6 (100.00)      11
Assets 3
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