jgrss/transfer ltae #249
Workflow file for this run
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| # This workflow will install Python dependencies, run tests and lint with a single version of Python | |
| # For more information see: https://help.github.com/actions/language-and-framework-guides/using-python-with-github-actions | |
| name: CI | |
| on: | |
| push: | |
| branches: [ main ] | |
| pull_request: | |
| branches: [ main ] | |
| jobs: | |
| Tests: | |
| runs-on: ubuntu-latest | |
| strategy: | |
| matrix: | |
| python-version: ["3.8", "3.9"] | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - name: Setup Python ${{ matrix.python-version }} | |
| uses: actions/setup-python@v4 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| cache: pip # caching pip dependencies based on changes to pyproject.toml | |
| - name: Install GDAL binaries | |
| run: | | |
| # Temporary? dpkg fix: https://askubuntu.com/questions/1276111/error-upgrading-grub-efi-amd64-signed-special-device-old-ssd-does-not-exist | |
| sudo rm /var/cache/debconf/config.dat | |
| sudo dpkg --configure -a | |
| # Install GDAL | |
| sudo apt update && sudo apt upgrade -y && sudo apt install -y | |
| sudo apt install software-properties-common -y | |
| sudo add-apt-repository ppa:ubuntugis/ppa | |
| sudo apt install libmysqlclient-dev default-libmysqlclient-dev -y | |
| sudo apt install gdal-bin libgdal-dev libgl1 libspatialindex-dev g++ -y | |
| export CPLUS_INCLUDE_PATH=/usr/include/gdal | |
| export C_INCLUDE_PATH=/usr/include/gdal | |
| export LD_LIBRARY_PATH=/usr/local/lib | |
| - name: Install Python packages | |
| run: | | |
| # Install Python GDAL | |
| pip install -U pip setuptools wheel | |
| pip install -U "Cython>=0.29.0,<3.0.0" "numpy<=1.21.0" | |
| GDAL_VERSION=$(gdal-config --version | awk -F'[.]' '{print $1"."$2"."$3}') | |
| pip install GDAL==$GDAL_VERSION --no-binary=gdal | |
| - name: Install PyTorch | |
| run: | | |
| TORCH_CPU="https://download.pytorch.org/whl/cpu" | |
| TORCH_VERSION="2.0.0" | |
| pip install --upgrade --no-cache-dir setuptools>=0.59.5 | |
| pip install torch==${TORCH_VERSION} torchvision torchaudio --extra-index-url $TORCH_CPU | |
| PYG_TORCH_CPU="https://data.pyg.org/whl/torch-${TORCH_VERSION}+cpu.html" | |
| pip install torch-scatter torch-sparse torch-cluster torch-spline-conv torch-geometric -f $PYG_TORCH_CPU | |
| - name: Install cultionet | |
| run: | | |
| pip install . | |
| - name: Pytest | |
| run: | | |
| pip install pytest | |
| cd tests/ | |
| python -m pytest | |
| # Version: | |
| # needs: Tests | |
| # if: github.event_name == 'push' && github.ref == 'refs/heads/main' && !contains(github.event.head_commit.message, 'chore(release):') | |
| # runs-on: ubuntu-latest | |
| # concurrency: release | |
| # steps: | |
| # - uses: actions/checkout@v2 | |
| # with: | |
| # fetch-depth: 0 | |
| # token: ${{ secrets.CULTIONET_TOKEN }} | |
| # - uses: actions/setup-python@v2 | |
| # with: | |
| # python-version: 3.8.12 | |
| # - name: Python Semantic Release | |
| # run: | | |
| # python -m pip install python-semantic-release | |
| # # Add credentials | |
| # git config user.name "github-actions" | |
| # git config user.email "github-actions@github.com" | |
| # # Bump cultionet version | |
| # semantic-release publish | |
| # env: | |
| # GH_TOKEN: ${{ secrets.CULTIONET_TOKEN }} | |
| # # https://github.com/fnkr/github-action-ghr | |
| # Release: | |
| # needs: Version | |
| # if: github.event_name == 'push' && github.ref == 'refs/heads/main' && !contains(github.event.head_commit.message, 'chore(release):') | |
| # name: Upload release | |
| # runs-on: ubuntu-latest | |
| # steps: | |
| # - uses: actions/checkout@v2 | |
| # - uses: actions/setup-python@v2 | |
| # with: | |
| # python-version: 3.8.12 | |
| # - uses: syphar/restore-virtualenv@v1 | |
| # id: cnetenv | |
| # with: | |
| # requirement_files: setup.cfg | |
| # - uses: syphar/restore-pip-download-cache@v1 | |
| # if: steps.cnetenv.outputs.cache-hit != 'true' | |
| # - name: Checkout | |
| # uses: fnkr/github-action-ghr@v1 | |
| # if: startsWith(github.ref, 'refs/tags/') | |
| # env: | |
| # GHR_PATH: . | |
| # GHR_COMPRESS: gz | |
| # GITHUB_TOKEN: ${{ secrets.CULTIONET_TOKEN }} |