setup.cfg

[metadata]
name = circtools
description = circtools - a circular RNA toolbox
version = 1.3.1
long_description = file: README.rst
long_description_content_type =  text/x-rst
url = https://github.com/jakobilab/circtools
author = Tobias Jakobi
author_email = tjakobi@arizona.edu
license= GNU General Public License (GPL)
license_files = LICENSE.rst
classifiers =
    Development Status :: 4 - Beta
    Intended Audience :: Science/Research
    Topic :: Scientific/Engineering :: Bio-Informatics
    Programming Language :: Python :: 3.7
    Programming Language :: Python :: 3.8
    Programming Language :: Python :: 3.9
    Programming Language :: Python :: 3.10
keywords=
    circRNA
    circular RNA bioinformatics
project_urls =
    Bug Reports = https://github.com/jakobilab/circtools/issues
    Jakobi Lab =  https://jakobilab.org
    Source = https://github.com/jakobilab/circtools
    Documentation = https://docs.circ.tools

[options]
zip_safe = False
platforms = Linux, Darwin
include_package_data = True
python_requires = >=3.7
install_requires =  pysam>=0.16.0.1
                    pybedtools>=0.7.10
                    biopython>=1.71
                    scipy>=0.19.0
                    reportlab>=3.3.0
                    pandas>=0.25.0
                    statsmodels
                    numpy>=1.14.5, <2.0.0
                    HTSeq>=2.0.0
                    pathos>=0.3.0

packages = find:

[options.entry_points]
console_scripts =
    circtools_install_R_dependencies = circtools.scripts.r_runner:install_R_dependencies
    circtools_circtest_wrapper = circtools.scripts.r_runner:circtools_circtest_wrapper
    circtools_enrich_visualization = circtools.scripts.r_runner:circtools_enrich_visualization
    circtools_exon_wrapper = circtools.scripts.r_runner:circtools_exon_wrapper
    circtools_primex_formatter = circtools.scripts.r_runner:circtools_primex_formatter
    circtools_primex_wrapper = circtools.scripts.r_runner:circtools_primex_wrapper
    circtools_quickcheck_wrapper = circtools.scripts.r_runner:circtools_quickcheck_wrapper
    circtools_reconstruct_visualization = circtools.scripts.r_runner:circtools_reconstruct_visualization
    circtools_sirna_formatter = circtools.scripts.r_runner:circtools_sirna_formatter
    circtools_reconstruct_coverage_graph = circtools.scripts.r_runner:circtools_reconstruct_coverage_graph
    circtools_reconstruct_summarized_coverage_profiles = circtools.scripts.r_runner:circtools_reconstruct_summarized_coverage_profiles
    create_igv_script = circtools.scripts.create_igv_script:main
    detect_new_exons_from_fuchs_data = circtools.scripts.detect_new_exons_from_fuchs_data:main
    create_igv_script_from_position_list = circtools.scripts.create_igv_script_from_position_list:main
    create_igv_script_from_gene_names = circtools.scripts.create_igv_script_from_gene_names:main
    guided_denovo_circle_structure = circtools.reconstruct.guided_denovo_circle_structure_parallel:main
    wonderdump = circtools.scripts.bash_runner:wonderdump
    circtools = circtools.circtools:main