Fix typo in DPF header line of VCF

iqbal-lab-org · Mar 11, 2020 · 69d6f91 · 69d6f91
1 parent 8e0685c
commit 69d6f91
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Showing 3 changed files with 3 additions and 3 deletions.
diff --git a/minos/gramtools.py b/minos/gramtools.py
@@ -339,7 +339,7 @@ def write_vcf_annotated_using_coverage_from_gramtools(
         '##FORMAT=<ID=FRS,Number=1,Type=Float,Description="Fraction of reads that support the genotype call">',
         '##FORMAT=<ID=GT,Number=1,Type=String,Description="Genotype">',
         '##FORMAT=<ID=DP,Number=1,Type=Integer,Description="total read depth from gramtools">',
-        '##FORMAT=<ID=<DPF,Number=1,Type=Float,Description="Depth Fraction, defined as DP divided by mean depth">',
+        '##FORMAT=<ID=DPF,Number=1,Type=Float,Description="Depth Fraction, defined as DP divided by mean depth">',
         '##FORMAT=<ID=GT_CONF,Number=1,Type=Float,Description="Genotype confidence. Difference in log likelihood of most likely and next most likely genotype">',
         f"##minosMeanReadDepth={mean_depth}",
     ]

diff --git a/tests/data/gramtools/write_vcf_annotated_using_coverage_from_gramtools.out.vcf b/tests/data/gramtools/write_vcf_annotated_using_coverage_from_gramtools.out.vcf
@@ -5,7 +5,7 @@
 ##FORMAT=<ID=FRS,Number=1,Type=Float,Description="Fraction of reads that support the genotype call">
 ##FORMAT=<ID=GT,Number=1,Type=String,Description="Genotype">
 ##FORMAT=<ID=DP,Number=1,Type=Integer,Description="total read depth from gramtools">
-##FORMAT=<ID=<DPF,Number=1,Type=Float,Description="Depth Fraction, defined as DP divided by mean depth">
+##FORMAT=<ID=DPF,Number=1,Type=Float,Description="Depth Fraction, defined as DP divided by mean depth">
 ##FORMAT=<ID=GT_CONF,Number=1,Type=Float,Description="Genotype confidence. Difference in log likelihood of most likely and next most likely genotype">
 ##minosMeanReadDepth=7
 ##contig=<ID=ref,length=10000>

diff --git a/tests/data/gramtools/write_vcf_annotated_using_coverage_from_gramtools.out.vcf.filter.vcf b/tests/data/gramtools/write_vcf_annotated_using_coverage_from_gramtools.out.vcf.filter.vcf
@@ -5,7 +5,7 @@
 ##FORMAT=<ID=FRS,Number=1,Type=Float,Description="Fraction of reads that support the genotype call">
 ##FORMAT=<ID=GT,Number=1,Type=String,Description="Genotype">
 ##FORMAT=<ID=DP,Number=1,Type=Integer,Description="total read depth from gramtools">
-##FORMAT=<ID=<DPF,Number=1,Type=Float,Description="Depth Fraction, defined as DP divided by mean depth">
+##FORMAT=<ID=DPF,Number=1,Type=Float,Description="Depth Fraction, defined as DP divided by mean depth">
 ##FORMAT=<ID=GT_CONF,Number=1,Type=Float,Description="Genotype confidence. Difference in log likelihood of most likely and next most likely genotype">
 ##minosMeanReadDepth=7
 ##contig=<ID=ref,length=10000>