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v1.9.0

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@bricoletc bricoletc released this 25 Jan 20:20
· 21 commits to main since this release

Added

  • Changelog
  • Static executable statically-linked against glibc/libgcc/libstd++ [#101,#163]
  • Script to build the gramtools backend (build.sh). Simplifies CI (docker image building), removes
    hacking into setup.py, and simplifies compiling on user machine.

Changed

  • Switched from setup.py to pyproject.toml and setup.cfg [#164], following PEP517

Removed

  • Retired variant-aware kmer indexing code [#159]
  • No longer install py-cortex-api by default. If gramtools discover is used,
    its installation is requested

Fixed

  • Variant rebasing in discover was incompletely tested- simplified algorithm and added tests
  • Infinite loop when no reads mapped to genome graph