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73 Open 152 Closed
73 Open 152 Closed
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Issues list

Typo in detailed walkthrough?
#264 opened Nov 9, 2024 by dariober
Best Practices for Sequential vs. Parallel Regression of Multiple Covariates in Harmony
#263 opened Nov 5, 2024 by vertesy
Is Regressing Covariates in Both ScaleData and RunHarmony Redundant and Potentially Problematic?
#262 opened Nov 5, 2024 by vertesy
different clustering results question Further information is requested
#259 opened Sep 10, 2024 by pikapika505
1
integrating snRNA (from multiome dataset) with scRNA public dataset question Further information is requested
#258 opened Sep 5, 2024 by Urja25
1
The error of harmony after subsetting data question Further information is requested
#256 opened Aug 21, 2024 by Carrey14
2
how to use harmony for Seurat Spatial Data?
#254 opened Jul 24, 2024 by flpxn7
1
Gene-level Correction question Further information is requested
#252 opened Jul 2, 2024 by DarioS
advice about parameters for integration
#251 opened May 24, 2024 by javiers1983
"Is It Feasible to Use Harmony Directly for Batch Correction in Seurat V5 Instead of “ IntegrateLayers“?"
#249 opened Apr 20, 2024 by Tylesteven
5
Can i obtain my original data shape?
#247 opened Mar 6, 2024 by leeleavitt
3
Cannot reproduce Seurat.ipynb vignette; parameters not passed response needed Issue will be closed within a month if no response is provided
#243 opened Feb 19, 2024 by Nichal123
4
vars_use Definition Not Explicit
#242 opened Feb 19, 2024 by DarioS
Convergence plot showing bizarre reading, data okay to use?
#241 opened Feb 14, 2024 by jcshuy
2
Plotting Function do_scatter Does Not Exist
#239 opened Feb 2, 2024 by DarioS
1
feature.loadings of harmony is missing in SummarizedExperiment
#238 opened Jan 25, 2024 by xiangpin
Error: matrix multiplication: incompatible matrix dimensions: 100x96490 and 96489x22
#237 opened Jan 17, 2024 by claireanjou
3
Harmony converged after 6 iterations Error in UseMethod(generic = "Key", object = object) : no applicable method for 'Key'... response needed Issue will be closed within a month if no response is provided
#221 opened Nov 19, 2023 by ncedi12
5
RunHarmony on the weights branch errors with incompatible matrix dimensions
#219 opened Nov 9, 2023 by deevdevil88
16
installation issues question Further information is requested response needed Issue will be closed within a month if no response is provided
#217 opened Nov 2, 2023 by vappiah
3
Batch effect seen on Heatmap
#216 opened Oct 27, 2023 by Lucas-Maciel
5
conda install -c bioconda r-harmony failed
#210 opened Oct 8, 2023 by hanguojun007
1
Obtaining batch effect estimates at cluster level question Further information is requested
#199 opened Jul 26, 2023 by wmacnair
1
Integrating pairs of samples separately in a Seurat object question Further information is requested
#196 opened May 19, 2023 by zhang248
correct batch effect for data from different organ and integrate multiple studies
#190 opened Mar 17, 2023 by Beki-seq
1
ProTip! no:milestone will show everything without a milestone.