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Migrated first pattern #23

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merged 2 commits into from
Sep 27, 2024
Merged

Migrated first pattern #23

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8155271
Migrated first pattern
stenkarl Sep 27, 2024
d1828bf
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stenkarl Sep 27, 2024
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48 changes: 34 additions & 14 deletions src/main/java/dev/ikm/tinkar/sandbox/Sept2024ConnectathonStarterData.java
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Original file line number Diff line number Diff line change
Expand Up @@ -6,6 +6,7 @@
import dev.ikm.tinkar.composer.Composer;
import dev.ikm.tinkar.composer.Session;
import dev.ikm.tinkar.composer.assembler.ConceptAssembler;
import dev.ikm.tinkar.composer.assembler.PatternAssembler;
import dev.ikm.tinkar.composer.template.FullyQualifiedName;
import dev.ikm.tinkar.composer.template.Identifier;
import dev.ikm.tinkar.composer.template.StatedAxiom;
Expand Down Expand Up @@ -48,6 +49,7 @@ public class Sept2024ConnectathonStarterData {
private final UUIDUtility uuidUtility = new UUIDUtility();

private final Composer composer = new Composer("Sept 2024 Connectathon Starter Data");
private final Session session;

public Sept2024ConnectathonStarterData(File exportDataStore, File exportFile) {
this.exportFile = exportFile;
Expand All @@ -61,21 +63,19 @@ public Sept2024ConnectathonStarterData(File exportDataStore, File exportFile) {
TinkarTerm.PRIMORDIAL_MODULE,
TinkarTerm.PRIMORDIAL_PATH);

session = composer.open(State.ACTIVE, TinkarTerm.USER, TinkarTerm.PRIMORDIAL_MODULE, TinkarTerm.PRIMORDIAL_PATH);

createComposerConcepts();
configureConceptsAndPatterns();

composer.commitSession(session);

starterData.build();
exportStarterData();

starterData.shutdown();
}

private void createComposerConcepts() {
Session session = composer.open(State.ACTIVE,
System.currentTimeMillis(),
TinkarTerm.USER,
TinkarTerm.PRIMORDIAL_MODULE,
TinkarTerm.PRIMORDIAL_PATH);

Concept performance = Concept.make("Performance", UUID.fromString("395cc864-7c51-4072-b3e7-f9195b40053a"));
session.compose((ConceptAssembler conceptAssembler) -> conceptAssembler
.concept(performance)
Expand All @@ -95,7 +95,7 @@ private void createComposerConcepts() {
.attach((StatedAxiom axiom) -> axiom
.isA(TinkarTerm.MODEL_CONCEPT))
);
composer.commitSession(session);

}

private void configureConceptsAndPatterns() {
Expand Down Expand Up @@ -154,15 +154,35 @@ private void configureConnectathonPatterns() {

private void createInvalidCovidTestResultPattern() {
Concept invalid = Concept.make("Invalid", UuidUtil.fromSNOMED("455371000124106"));
starterData.concept(invalid)
.synonym("Invalid", TinkarTerm.PREFERRED)
.identifier(TinkarTerm.UNIVERSALLY_UNIQUE_IDENTIFIER, invalid.asUuidArray()[0].toString())
.build();

starterData.pattern(EntityProxy.Pattern.make("Invalid Covid Test Result Pattern", uuidUtility.createUUID("Invalid Covid Test Result Pattern")))
session.compose((ConceptAssembler conceptAssembler) -> conceptAssembler
.concept(invalid)
.attach((FullyQualifiedName fqn) -> fqn
.language(ENGLISH_LANGUAGE)
.text("Invalid")
.caseSignificance(DESCRIPTION_NOT_CASE_SENSITIVE)
.attach((USDialect usDialect) -> usDialect.acceptability(TinkarTerm.PREFERRED)))
.attach((Synonym synonym) -> synonym
.text("Invalid")
.language(ENGLISH_LANGUAGE)
.caseSignificance(DESCRIPTION_NOT_CASE_SENSITIVE)
.attach((USDialect usDialect) -> usDialect.acceptability(TinkarTerm.PREFERRED)))
.attach((Identifier identifier) -> identifier
.source(TinkarTerm.UNIVERSALLY_UNIQUE_IDENTIFIER)
.identifier(invalid.asUuidArray()[0].toString()))
);

session.compose((PatternAssembler patternAssembler) -> patternAssembler
.pattern(EntityProxy.Pattern.make("Invalid Covid Test Result Pattern", uuidUtility.createUUID("Invalid Covid Test Result Pattern")))
.meaning(invalid)
.purpose(TinkarTerm.MEMBERSHIP_SEMANTIC)
.build();
.attach((Synonym synonym) -> synonym
.text("Invalid Covid Test Result Pattern")
.language(ENGLISH_LANGUAGE)
.caseSignificance(DESCRIPTION_NOT_CASE_SENSITIVE)
.attach((USDialect usDialect) -> usDialect.acceptability(TinkarTerm.PREFERRED)))
);

}

private void createUndeterminedCovidTestResultPattern() {
Expand Down
25 changes: 15 additions & 10 deletions src/main/java/dev/ikm/tinkar/starterdata/ConceptUtility.java
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Original file line number Diff line number Diff line change
@@ -1,13 +1,18 @@
package dev.ikm.tinkar.starterdata;

import dev.ikm.tinkar.entity.*;
import dev.ikm.tinkar.entity.ConceptRecord;
import dev.ikm.tinkar.entity.ConceptRecordBuilder;
import dev.ikm.tinkar.entity.ConceptVersionRecord;
import dev.ikm.tinkar.entity.ConceptVersionRecordBuilder;
import dev.ikm.tinkar.entity.Entity;
import dev.ikm.tinkar.entity.EntityVersion;
import dev.ikm.tinkar.entity.RecordListBuilder;
import dev.ikm.tinkar.terms.EntityProxy;
import dev.ikm.tinkar.terms.TinkarTerm;

import java.util.UUID;
import org.slf4j.Logger;
import org.slf4j.LoggerFactory;

import java.util.UUID;

class ConceptUtility {

private static final Logger LOG = LoggerFactory.getLogger(ConceptUtility.class.getSimpleName());
Expand All @@ -19,19 +24,19 @@ public ConceptUtility(UUIDUtility uuidUtility) {
}

protected Entity<? extends EntityVersion> createConcept(EntityProxy.Concept concept,
Entity<? extends EntityVersion> stampEntity){
Entity<? extends EntityVersion> stampEntity) {
UUID uuid = concept.asUuidArray()[0];

long[] additionalUuidLongsArr = null;
if (concept.asUuidArray().length > 1) {
additionalUuidLongsArr = new long[(concept.asUuidArray().length-1)*2];
for (int i=1; i < concept.asUuidArray().length; i++) {
additionalUuidLongsArr[(i*2)-2] = concept.asUuidArray()[i].getMostSignificantBits();
additionalUuidLongsArr[(i*2)-1] = concept.asUuidArray()[i].getLeastSignificantBits();
additionalUuidLongsArr = new long[(concept.asUuidArray().length - 1) * 2];
for (int i = 1; i < concept.asUuidArray().length; i++) {
additionalUuidLongsArr[(i * 2) - 2] = concept.asUuidArray()[i].getMostSignificantBits();
additionalUuidLongsArr[(i * 2) - 1] = concept.asUuidArray()[i].getLeastSignificantBits();
}
}

LOG.info("Building Concept");
LOG.debug("Building Concept");
RecordListBuilder<ConceptVersionRecord> versions = RecordListBuilder.make();
ConceptRecord conceptRecord = ConceptRecordBuilder.builder()
.nid(concept.nid())
Expand Down
22 changes: 14 additions & 8 deletions src/main/java/dev/ikm/tinkar/starterdata/PatternUtility.java
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Original file line number Diff line number Diff line change
@@ -1,9 +1,15 @@
package dev.ikm.tinkar.starterdata;

import dev.ikm.tinkar.entity.*;
import dev.ikm.tinkar.entity.Entity;
import dev.ikm.tinkar.entity.EntityVersion;
import dev.ikm.tinkar.entity.FieldDefinitionRecord;
import dev.ikm.tinkar.entity.PatternRecord;
import dev.ikm.tinkar.entity.PatternRecordBuilder;
import dev.ikm.tinkar.entity.PatternVersionRecord;
import dev.ikm.tinkar.entity.PatternVersionRecordBuilder;
import dev.ikm.tinkar.entity.RecordListBuilder;
import dev.ikm.tinkar.terms.EntityProxy;
import org.eclipse.collections.api.list.ImmutableList;

import org.slf4j.Logger;
import org.slf4j.LoggerFactory;

Expand All @@ -18,11 +24,11 @@ public PatternUtility(UUIDUtility uuidUtility) {
}

protected Entity<? extends EntityVersion> createPattern(EntityProxy.Pattern pattern,
EntityProxy.Concept meaningConcept,
EntityProxy.Concept purposeConcept,
Entity<? extends EntityVersion> authoringSTAMP,
ImmutableList<FieldDefinitionRecord> fieldDefinitions){
LOG.info("Building " + pattern.description() + " Chronology");
EntityProxy.Concept meaningConcept,
EntityProxy.Concept purposeConcept,
Entity<? extends EntityVersion> authoringSTAMP,
ImmutableList<FieldDefinitionRecord> fieldDefinitions) {
LOG.debug("Building " + pattern.description() + " Chronology");

RecordListBuilder<PatternVersionRecord> versions = RecordListBuilder.make();
PatternRecord patternRecord = PatternRecordBuilder.builder()
Expand All @@ -33,7 +39,7 @@ protected Entity<? extends EntityVersion> createPattern(EntityProxy.Pattern patt
.versions(versions.toImmutable())
.build();

LOG.info("Building " + pattern.description() + " Version");
LOG.debug("Building " + pattern.description() + " Version");
versions.add(PatternVersionRecordBuilder.builder()
.chronology(patternRecord)
.stampNid(authoringSTAMP.nid())
Expand Down
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