jooq

uploader/pom.xml

@@ -96,6 +96,23 @@
 			<artifactId>junit-jupiter</artifactId>
 			<scope>test</scope>
 		</dependency>
+
+		<dependency>
+			<groupId>org.jooq</groupId>
+			<artifactId>jooq</artifactId>
+			<version>3.19.6</version>
+		</dependency>
+		<!-- These may not be required, unless you use the GenerationTool manually for code generation -->
+		<dependency>
+			<groupId>org.jooq</groupId>
+			<artifactId>jooq-meta</artifactId>
+			<version>3.19.6</version>
+		</dependency>
+		<dependency>
+			<groupId>org.jooq</groupId>
+			<artifactId>jooq-codegen</artifactId>
+			<version>3.19.6</version>
+		</dependency>
 		<dependency>
 			<groupId>org.testcontainers</groupId>
 			<artifactId>mysql</artifactId>

uploader/src/main/java/edu/harvard/dbmi/avillach/dataupload/codegen/Generator.java

@@ -0,0 +1,17 @@
+package edu.harvard.dbmi.avillach.dataupload.codegen;
+
+import org.jooq.Configuration;
+import org.jooq.codegen.GenerationTool;
+
+import java.net.URI;
+import java.nio.file.Files;
+import java.nio.file.Path;
+import java.nio.file.Paths;
+
+public class Generator {
+    public static void main(String[] args) throws Exception {
+        URI uri = Generator.class.getClassLoader().getResource("jooq.xml").toURI();
+        String s = Files.readString(Paths.get(uri));
+        GenerationTool.generate(s);
+    }
+}