add slurm profile

harvardinformatics · Mar 29, 2024 · f8c3b2b · f8c3b2b
1 parent b76aa92
commit f8c3b2b
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Showing 12 changed files with 423 additions and 559 deletions.
diff --git a/config/resources.yaml b/config/resources.yaml
diff --git a/profiles/default/config.yaml b/profiles/default/config.yaml
@@ -1,5 +1,6 @@
 use-conda: True
 
+# Control number of threads each rule will use.
 set-threads:
   # Reference Genome Processing
   copy_reference: 1
@@ -76,6 +77,7 @@ set-threads:
   sentieon_combine_gvcf: 1
   sentieon_bam_stats: 1
 
+# Control other resources used by each rule.
 set-resources:
   # Reference Genome Processing
   copy_reference:

diff --git a/profiles/gls-gatk/config.yaml b/profiles/gls-gatk/config.yaml
diff --git a/profiles/gls-sentieon/config.yaml b/profiles/gls-sentieon/config.yaml
diff --git a/profiles/slurm/cluster_config.yml b/profiles/slurm/cluster_config.yml