trying to get cov filter to build

harvardinformatics · Apr 4, 2024 · c00f79f · c00f79f
1 parent 513b3d0
commit c00f79f
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Showing 3 changed files with 3 additions and 3 deletions.
diff --git a/.github/workflows/ci.yaml b/.github/workflows/ci.yaml
@@ -19,4 +19,4 @@ jobs:
         directory: .test/ci/
         snakefile: workflow/Snakefile
         args: "--use-conda --show-failed-logs -j 1 --conda-cleanup-pkgs cache --conda-frontend mamba"
-        # stagein: "mamba install -y -c conda-forge 'python==3.11.4'"
+        stagein: "conda config --set channel_priority strict"
diff --git a/.github/workflows/main.yaml b/.github/workflows/main.yaml
@@ -21,7 +21,7 @@ jobs:
         directory: .test/ecoli/
         snakefile: workflow/Snakefile
         args: "--use-conda --show-failed-logs -j 10 --conda-cleanup-pkgs cache --conda-frontend mamba"
-        # stagein: "mamba install -y -c conda-forge 'python==3.11.4'"
+        stagein: "conda config --set channel_priority strict"
   Testing_config-genomes:
     runs-on: ubuntu-latest
     steps:

diff --git a/workflow/envs/cov_filter.yml b/workflow/envs/cov_filter.yml
@@ -10,7 +10,7 @@ dependencies:
   - pip=24.0
   - rust==1.77.1
   - gcc==13.2.0
-  - binutils
+  - binutils=2.40
   - make=4.3
   - pip:
       - pyd4